TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000020_1.0 # Protein # Selenoprotein P (SelP) # Homo sapiens #
Complete

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000286.1  Casuarius casuarius isolate B32419 scaffold_285, ...  105     6e-23
PTFA01000109.1  Casuarius casuarius isolate B32419 scaffold_108, ...  69.7    4e-11
PTFA01000012.1  Casuarius casuarius isolate B32419 scaffold_11, w...  41.6    0.027
PTFA01000100.1  Casuarius casuarius isolate B32419 scaffold_99, w...  33.9    7.4  


>PTFA01000286.1 Casuarius casuarius isolate B32419 scaffold_285, whole genome 
shotgun sequence
Length=1229185

 Score = 105 bits (263),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 0/73 (0%)
 Frame = +3

Query  68       KLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLL  127
                +LEDLRVKL+ EG  NISY+VVNHQG  S  K+  LK  VS++I VYQQ+E Q DVWT L
Sbjct  1001409  RLEDLRVKLENEGLVNISYVVVNHQGTQSHRKFHLLKESVSDYITVYQQDEKQADVWTTL  1001588

Query  128      NGSKDDFLIYDRC  140
                NG+KDDFLIYDR 
Sbjct  1001589  NGNKDDFLIYDRS  1001627


 Score = 76.6 bits (187),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 33/43 (77%), Positives = 36/43 (84%), Gaps = 0/43 (0%)
 Frame = +3

Query  138      DRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL  180
                 RCGRLVYHLGLP+SFL+F YVEE+IKIAYCE KCGNCS    
Sbjct  1003323  HRCGRLVYHLGLPYSFLSFQYVEESIKIAYCENKCGNCSYMVF  1003451


 Score = 69.7 bits (169),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 44/68 (65%), Positives = 52/68 (76%), Gaps = 4/68 (6%)
 Frame = +3

Query  1       MWRSlglalalcllPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY  60
               MW  LGL L+LCLL  GG E Q+    CK+PP W I +++PMLNS GSVTVVALLQAS Y
Sbjct  999390  MWAGLGLVLSLCLLSGGGAEIQN----CKEPPEWHIGEENPMLNSRGSVTVVALLQAS*Y  999557

Query  61      LCILQASK  68
               LC+LQAS+
Sbjct  999558  LCLLQASR  999581


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 32/67 (48%), Positives = 41/67 (61%), Gaps = 0/67 (0%)
 Frame = +2

Query  281      CINQLLCKLPTDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENIT  340
                C NQL       S+    S CCHCRHL+FE+ G+++T QC+  LP+ CS  G    E+IT
Sbjct  1005185  CKNQLT*NWQKASDSTSSS*CCHCRHLLFEELGNSVT*QCRGALPNSCS*HGQLLAEDIT  1005364

Query  341      ESCQURL  347
                ES Q RL
Sbjct  1005365  ES*Q*RL  1005385


>PTFA01000109.1 Casuarius casuarius isolate B32419 scaffold_108, whole genome 
shotgun sequence
Length=3455516

 Score = 69.7 bits (169),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 31/71 (44%), Positives = 43/71 (61%), Gaps = 0/71 (0%)
 Frame = -3

Query  69      LEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLN  128
               L  LR KL ++G +++ Y++VN +   SR  +  L  +    + VYQQE    DVW LL 
Sbjct  303876  LGGLRDKLSRQGMADVRYMIVNEKAPLSRALFGELARQAPPGVAVYQQEPQDPDVWQLLE  303697

Query  129     GSKDDFLIYDR  139
               G KDDFL+YDR
Sbjct  303696  GDKDDFLVYDR  303664


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 23/38 (61%), Positives = 28/38 (74%), Gaps = 0/38 (0%)
 Frame = -3

Query  140     CGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSL  177
               C RL +H+ LP+SFL FPYVE AI+  Y +  CGNCSL
Sbjct  302748  CARLAFHIQLPYSFLHFPYVESAIRFTYSKDFCGNCSL  302635


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 20/48 (42%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
 Frame = -1

Query  21      SQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUYLCILQASK  68
               + + S LC+  P W++    PM  + G VTVVALL+AS + C+ QA +
Sbjct  304157  TANSSRLCQVAPVWTVNGSSPMAGAVGQVTVVALLKAS*HFCLRQAHR  304014


>PTFA01000012.1 Casuarius casuarius isolate B32419 scaffold_11, whole genome 
shotgun sequence
Length=9512740

 Score = 41.6 bits (96),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (66%), Gaps = 6/58 (10%)
 Frame = +3

Query  306      HLIFEKT-GSAITUQCKENLPSLCSUQGLRA--EENITESCQURLPPAAUQISQQLIP  360
                HL+++ T  +A+T + + N PSLCS +GL+A  E ++T S Q RLP     +SQ L+P
Sbjct  3748383  HLLYDSTVATALTQK*ETNFPSLCSERGLKAAQERDLTISYQARLP---LVLSQLLVP  3748547


>PTFA01000100.1 Casuarius casuarius isolate B32419 scaffold_99, whole genome 
shotgun sequence
Length=3551426

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 20/67 (30%), Positives = 33/67 (49%), Gaps = 4/67 (6%)
 Frame = +1

Query  307     LIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQ----QLIPTE  362
               LIF  T ++I    +  LP L   +G + EE   + CQ  LPP+A Q  +    + +  +
Sbjct  648079  LIFRTTMASIVWCSRNLLPGLRGVRGEQPEEGNHQPCQRVLPPSATQTRKAEDNRWVRAD  648258

Query  363     ASASURU  369
                 A++R 
Sbjct  648259  QGANCRA  648279



Lambda      K        H        a         alpha
   0.318    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102259404574


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
