TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens #
Complete

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000044.1  Casuarius casuarius isolate B32419 scaffold_43, w...  114     2e-24
PTFA01000096.1  Casuarius casuarius isolate B32419 scaffold_95, w...  34.7    7.4  


>PTFA01000044.1 Casuarius casuarius isolate B32419 scaffold_43, whole genome 
shotgun sequence
Length=5744358

 Score = 114 bits (285),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 66/141 (47%), Positives = 84/141 (60%), Gaps = 14/141 (10%)
 Frame = +2

Query  348      GASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQ  407
                G S+ SN E     + QMELE+TGPS+PSVI DE+G++IDS  PSG+P+QFVFEEI WQQ
Sbjct  4033994  GISKISNSE---PVLLQMELESTGPSIPSVIHDENGNVIDSRDPSGDPIQFVFEEITWQQ  4034164

Query  408      ELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRT  467
                E+ WEEAA++LE+AMYPFKKV            K      HS+ +W       C  + RT
Sbjct  4034165  EIPWEEAAQKLELAMYPFKKV-----------RKGLRSFFHSMSVWAGSFSPRCPVTSRT  4034311

Query  468      LRETVLESSPILTLLNESFIS  488
                 R      S I +    S +S
Sbjct  4034312  SRNQRPRLSSIQSSTRNSLLS  4034374


 Score = 109 bits (273),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 51/72 (71%), Positives = 61/72 (85%), Gaps = 1/72 (1%)
 Frame = +1

Query  180      VSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNN  238
                +S +ALSGLRNWTA A+P +V   R F+ FLPP  + +LG+PWWIIPSEL++FTGYLSNN
Sbjct  4028968  ISHVALSGLRNWTAPAAPMSVMFARQFKAFLPPKNKLDLGDPWWIIPSELNIFTGYLSNN  4029147

Query  239      RFYPPPPKGKEV  250
                RFYPPPPKGKEV
Sbjct  4029148  RFYPPPPKGKEV  4029183


 Score = 95.1 bits (235),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 41/55 (75%), Positives = 51/55 (93%), Gaps = 0/55 (0%)
 Frame = +3

Query  535      VHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQ  589
                +HHINANYFLDITS+KPE++ES++FSFS+ FEDPSTATY+QFLKEGL+R  P L+
Sbjct  4039023  IHHINANYFLDITSMKPEDVESSIFSFSTNFEDPSTATYLQFLKEGLQRAKPYLK  4039187


 Score = 94.0 bits (232),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 47/48 (98%), Gaps = 0/48 (0%)
 Frame = +2

Query  290      FRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHR  337
                FRIHAEFQL+EPPDFPFWFSP QFTGHIILSKD++HVR+F+LFVPN+R
Sbjct  4031156  FRIHAEFQLNEPPDFPFWFSPGQFTGHIILSKDSSHVREFKLFVPNNR  4031299


 Score = 80.9 bits (198),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (93%), Gaps = 0/42 (0%)
 Frame = +1

Query  250      VIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFR  291
                VIIH+LLSMFHPRPFVKTRFAPQGAVAC+ A+S FYYT+ FR
Sbjct  4030204  VIIHKLLSMFHPRPFVKTRFAPQGAVACIQAVSSFYYTIAFR  4030329


 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 33/39 (85%), Positives = 36/39 (92%), Gaps = 0/39 (0%)
 Frame = +2

Query  427      KVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSG  465
                +VSYLPFT+AF+RAKAE KLVHSILLWGALDDQSC G G
Sbjct  4035605  QVSYLPFTQAFERAKAEKKLVHSILLWGALDDQSC*GEG  4035721


 Score = 67.0 bits (162),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 41/52 (79%), Gaps = 1/52 (2%)
 Frame = +1

Query  66       KTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGS-CSVTQTGVQWCSHS  116
                K+LG++GLFLFSSLDT+ D+Y+SPEEFKPIAEKLTG   S  Q+ +   S S
Sbjct  4026982  KSLGSEGLFLFSSLDTNNDLYLSPEEFKPIAEKLTGRYLSALQSSLLRASKS  4027137


 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 30/32 (94%), Positives = 31/32 (97%), Gaps = 0/32 (0%)
 Frame = +1

Query  463      GSGRTLRETVLESSPILTLLNESFISTWSLVK  494
                GSGRTLRETVLESSPIL LLNESFIS+WSLVK
Sbjct  4036543  GSGRTLRETVLESSPILALLNESFISSWSLVK  4036638


 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 27/29 (93%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
 Frame = +3

Query  337      RSLNVDMEWLYGASESSNMEVDIGYIPQM  365
                RSLNVDMEWLYGASESSNMEVDIGY+PQ+
Sbjct  4032951  RSLNVDMEWLYGASESSNMEVDIGYLPQV  4033037


 Score = 52.0 bits (123),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 26/28 (93%), Gaps = 0/28 (0%)
 Frame = +3

Query  508      HQKLAGLHLEKYSFPVEMMICLPNGTVV  535
                + KLA LHLEKY+FPVEM+ICLPNGTVV
Sbjct  4037385  YSKLADLHLEKYNFPVEMIICLPNGTVV  4037468


 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/26 (81%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
 Frame = +3

Query  155      TLTIEARFQPLLPETMTKSKDGFLGV  180
                TL+I A+FQPL+ ETMTKSKDGFLGV
Sbjct  4027974  TLSIVAKFQPLVMETMTKSKDGFLGV  4028051


>PTFA01000096.1 Casuarius casuarius isolate B32419 scaffold_95, whole genome 
shotgun sequence
Length=3606548

 Score = 34.7 bits (78),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 14/32 (44%), Positives = 21/32 (66%), Gaps = 0/32 (0%)
 Frame = -2

Query  88     SPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQ  119
              SPE ++P A +L   C+  Q G+Q CS+ SL+
Sbjct  17701  SPECYRPTAVRLLSICAFNQKGIQNCSNESLK  17606



Lambda      K        H        a         alpha
   0.320    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184785755355


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
