TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo
sapiens # Complete

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000138.1  Casuarius casuarius isolate B32419 scaffold_137, ...  145     7e-34
PTFA01000005.1  Casuarius casuarius isolate B32419 scaffold_4, wh...  125     1e-27
PTFA01000112.1  Casuarius casuarius isolate B32419 scaffold_111, ...  85.1    4e-15
PTFA01000511.1  Casuarius casuarius isolate B32419 scaffold_510, ...  50.1    2e-04
PTFA01000313.1  Casuarius casuarius isolate B32419 scaffold_312, ...  43.5    0.021
PTFA01000127.1  Casuarius casuarius isolate B32419 scaffold_126, ...  40.0    0.21 


>PTFA01000138.1 Casuarius casuarius isolate B32419 scaffold_137, whole genome 
shotgun sequence
Length=2905401

 Score = 145 bits (366),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 73/76 (96%), Gaps = 0/76 (0%)
 Frame = -3

Query  433      ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVG  492
                + SDDLFSLPYCPGKTLVVGASYVALECAGFLAG GLDVTVMVRSILLRGFDQEMAE+VG
Sbjct  1443892  LFSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAERVG  1443713

Query  493      SYMEQHGVKFLRKFIP  508
                ++ME HGVKF+RKF+P
Sbjct  1443712  AHMETHGVKFIRKFVP  1443665


 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 40/46 (87%), Positives = 45/46 (98%), Gaps = 0/46 (0%)
 Frame = -2

Query  688      DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV  733
                +RVIGFH+LGPNAGEVTQGFAAA+KCGLTK+LLD+TIGIHPTC EV
Sbjct  1438694  NRVIGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAEV  1438557


 Score = 85.1 bits (209),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 37/49 (76%), Positives = 43/49 (88%), Gaps = 0/49 (0%)
 Frame = -1

Query  349      VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKA  397
                V+HNWE M +AIQN+I SLNWGYR+SLREK+V Y+NSYGEFVE HKIK 
Sbjct  1445661  VKHNWEIMVEAIQNYIGSLNWGYRVSLREKSVTYINSYGEFVEPHKIKV  1445515


 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 47/54 (87%), Gaps = 0/54 (0%)
 Frame = -3

Query  567      KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC  620
                ++GK+PVND EQTNVPYVYA+GDIL+ K ELTPVAIQ+GKLLA+RL+G S  K 
Sbjct  1441735  RNGKVPVNDEEQTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSSTKV  1441574


 Score = 78.6 bits (192),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 35/40 (88%), Positives = 38/40 (95%), Gaps = 0/40 (0%)
 Frame = -1

Query  309      GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ  348
                GLGGTCVNVGCIPKKLMHQAALLGQAL DSRK+GW+Y +Q
Sbjct  1446180  GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKYGWQYEEQ  1446061


 Score = 71.6 bits (174),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 37/61 (61%), Positives = 42/61 (69%), Gaps = 4/61 (7%)
 Frame = -1

Query  396      KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDD----LFSLPYCPGKTLVV  451
                +ATN+KGQ TY+TA  FV+ATGERPRYLGI GD+EYCIT  D       L  C GK   V
Sbjct  1444101  QATNRKGQVTYHTAETFVLATGERPRYLGIPGDREYCITR*DEKAFFVYLSVCKGKQTCV  1443922

Query  452      G  452
                G
Sbjct  1443921  G  1443919


 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (92%), Gaps = 0/37 (0%)
 Frame = -1

Query  620      CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI  656
                CDYINVPTTVFTPLEYG CGL+EE+A+E Y K+NLE+
Sbjct  1441362  CDYINVPTTVFTPLEYGSCGLAEERAMEEYGKQNLEV  1441252


 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 25/33 (76%), Positives = 31/33 (94%), Gaps = 0/33 (0%)
 Frame = -2

Query  655      EIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH  687
                ++YH+LFWPLEWT+ GR+NNTCYAKIICNK D+
Sbjct  1440347  QVYHSLFWPLEWTIPGRDNNTCYAKIICNKHDN  1440249


 Score = 62.4 bits (150),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 37/81 (46%), Positives = 49/81 (60%), Gaps = 8/81 (10%)
 Frame = -1

Query  170      LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQK  229
                LVGL +   V +++ S C   +  K  +       NV  L  +DDG  +Q+VL E+TNQ+
Sbjct  1451235  LVGL-QYVTVWVYNTSACLKRSL*KLFY-------NVSVLIFLDDGPSIQQVLVELTNQR  1451080

Query  230      TVPNIFVNKVHVGGCDQTFQA  250
                TVPN+FVN  HVGGCD TFQ 
Sbjct  1451079  TVPNVFVNGRHVGGCDSTFQV  1451017


 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)
 Frame = -2

Query  282      CAKEAAILGKKVMVLDFVVPSPQGTSWG  309
                 ++EAA+LGKKVMVLD+VVP+P GTSWG
Sbjct  1447166  LSQEAAVLGKKVMVLDYVVPTPLGTSWG  1447083


 Score = 47.8 bits (112),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/26 (85%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
 Frame = -2

Query  542      VLLAIGRDSCTRKIGLEKIGVKINEK  567
                VL+AIGRD+CTR IGLE IGVKINEK
Sbjct  1442879  VLIAIGRDACTRNIGLETIGVKINEK  1442802


 Score = 47.4 bits (111),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/44 (55%), Positives = 32/44 (73%), Gaps = 1/44 (2%)
 Frame = -1

Query  509      VMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCT  552
                + V++LE+G PG+LKV AKSTEG E  EG YNTV ++   D C+
Sbjct  1443387  IQVEKLEEGMPGRLKVTAKSTEGPEVFEGEYNTVSIS-ALDICS  1443259


 Score = 37.4 bits (85),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 16/23 (70%), Positives = 21/23 (91%), Gaps = 0/23 (0%)
 Frame = -3

Query  732      EVFTTLEITKSSGLDITQKGCUG  754
                +VFTT++ITKSSG DI+Q+GC G
Sbjct  1438270  QVFTTMDITKSSGQDISQRGC*G  1438202


>PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, whole genome shotgun 
sequence
Length=12021036

 Score = 125 bits (314),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 55/70 (79%), Positives = 65/70 (93%), Gaps = 0/70 (0%)
 Frame = +2

Query  442      PYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVK  501
                PYCPGKTLVVGASYVALECAGFLAG GLDVTVMVRSILLRGFDQ++A K+G YME+HG+ 
Sbjct  8391074  PYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDIANKIGEYMEEHGIN  8391253

Query  502      FLRKFIPVMV  511
                F+++F+P+ V
Sbjct  8391254  FIKQFVPIKV  8391283


 Score = 111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 59/129 (46%), Positives = 73/129 (57%), Gaps = 43/129 (33%)
 Frame = +1

Query  349      VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK------------  396
                V+HNW TMT+++QN+I SLNWGYR++LREK V Y N+YGEFV  H +K            
Sbjct  8388805  VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVGPHTVKVLPSHV*WVFL*  8388984

Query  397      -------------------------------ATNKKGQETYYTAAQFVIATGERPRYLGI  425
                                               ATNK+G E  YTA +F+IATGERPRYLGI
Sbjct  8388985  CFINKDAFQMEYSFPC*DWKVLTSDSFFVQQATNKRGIEKLYTAERFLIATGERPRYLGI  8389164

Query  426      QGDKEYCIT  434
                 GD+EYCI+
Sbjct  8389165  PGDEEYCIS  8389191


 Score = 77.4 bits (189),  Expect(2) = 3e-19, Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 38/40 (95%), Gaps = 0/40 (0%)
 Frame = +1

Query  309      GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ  348
                GLGGTCVNVGCIPKKLMHQAALLGQAL DSRKFGW++ ++
Sbjct  8387803  GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEE  8387922


 Score = 42.4 bits (98),  Expect(2) = 3e-19, Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 21/26 (81%), Gaps = 0/26 (0%)
 Frame = +3

Query  284      KEAAILGKKVMVLDFVVPSPQGTSWG  309
                +EAA   KKVMVLDFV P+P GTSWG
Sbjct  8387610  QEAAKYDKKVMVLDFVTPTPLGTSWG  8387687


 Score = 87.4 bits (215),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
 Frame = +1

Query  562      VKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC  620
                V  N ++GKIPVND EQTNVPY+YAVGDIL+DK ELTPVAIQ+G+LL QRL+G +  K 
Sbjct  8397568  VNANCRTGKIPVNDEEQTNVPYIYAVGDILQDKLELTPVAIQAGRLLVQRLYGGATIKV  8397744


 Score = 84.7 bits (208),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  688      DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV  733
                +RVIGFH+LGPNAGEVTQGFAAA+KCG+TK+ LD TIGIHP C EV
Sbjct  8405380  ERVIGFHVLGPNAGEVTQGFAAAIKCGMTKEQLDSTIGIHPVCAEV  8405517


 Score = 65.1 bits (157),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (63%), Gaps = 9/72 (13%)
 Frame = +3

Query  593      DKPELTPVAIQSGKLLAQR--------LFGASLEKCDYINVPTTVFTPLEYGCCGLSEEK  644
                + P   PV  Q+ ++L+           F  +  +CDY+NVPTTVFTPLEYG CG SEE 
Sbjct  8400813  NNPAFLPV-FQTAEILSAC*YITDIVCFFVLNTTQCDYVNVPTTVFTPLEYGACGYSEES  8400989

Query  645      AIEVYKKENLEI  656
                A+E + +EN+E+
Sbjct  8400990  AVEKFGEENIEV  8401025


 Score = 60.8 bits (146),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +3

Query  637      CCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGF  693
                CC ++      V      ++YH+ FWPLEWTV  R+NN CYAKIICN  D+  V+ F
Sbjct  8403015  CCEITNLSLTSVLY---FQVYHSYFWPLEWTVPSRDNNKCYAKIICNIQDNVSVVFF  8403176


 Score = 53.9 bits (128),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/33 (76%), Positives = 30/33 (91%), Gaps = 0/33 (0%)
 Frame = +1

Query  542      VLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVN  574
                VLLAIGRD+CTRKIGL+K+GVKINEK G++ V 
Sbjct  8395825  VLLAIGRDACTRKIGLDKVGVKINEK*GQMSVQ  8395923


 Score = 43.9 bits (102),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 27/32 (84%), Gaps = 0/32 (0%)
 Frame = +2

Query  511      VQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV  542
                ++Q+E+G+PG+LKV A+ST G + IEG YNTV
Sbjct  8394011  IEQIEEGTPGRLKVTAQSTVGNQIIEGEYNTV  8394106


>PTFA01000112.1 Casuarius casuarius isolate B32419 scaffold_111, whole genome 
shotgun sequence
Length=3387038

 Score = 85.1 bits (209),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 37/51 (73%), Positives = 42/51 (82%), Gaps = 0/51 (0%)
 Frame = -1

Query  303      PQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNW  353
                P GT WGLGGTCVNVGCIPKKLMHQAALLG AL D+ ++GW  +Q V+H W
Sbjct  1364024  PLGTKWGLGGTCVNVGCIPKKLMHQAALLGSALKDAERYGWNISQPVQHTW  1363872


 Score = 55.8 bits (133),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 30/58 (52%), Positives = 37/58 (64%), Gaps = 1/58 (2%)
 Frame = -1

Query  624      NVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCY-AKI  680
                 VPTTVFTPLEYGC GLSEE+A++ Y  +N+E+   L    E      E + CY AKI
Sbjct  1337330  QVPTTVFTPLEYGCVGLSEEEAVQCYGSDNIEVCLIL*LMSELCYEKLEVSLCYQAKI  1337157


 Score = 55.5 bits (132),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 0/38 (0%)
 Frame = -2

Query  456      VALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGS  493
                V+LECAGFL G GLD TVM+RSI LRGFDQ   + V S
Sbjct  1354117  VSLECAGFLTGIGLDTTVMIRSIPLRGFDQVSTKHVAS  1354004


 Score = 52.0 bits (123),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (72%), Gaps = 0/46 (0%)
 Frame = -1

Query  547      GRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILE  592
                GR   TR + LE +GVK N ++GKI V+  E T+VP++YAVGDI E
Sbjct  1343006  GRVPDTRTLNLETVGVKTNSETGKIIVDASEATSVPHIYAVGDITE  1342869


 Score = 49.3 bits (116),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 27/43 (63%), Gaps = 0/43 (0%)
 Frame = -3

Query  712      KCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG  754
                +CG T   L  TIGIHPTC E  T L ITK SGLD T  GC G
Sbjct  1331607  RCGATYPQLMKTIGIHPTCAEEITKLHITKRSGLDATVTGC*G  1331479


 Score = 44.7 bits (104),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 21/32 (66%), Positives = 25/32 (78%), Gaps = 0/32 (0%)
 Frame = -3

Query  594      KPELTPVAIQSGKLLAQRLFGASLEKCDYINV  625
                +PELTP AI +GKLLA+RLFG S E  DY +V
Sbjct  1337643  RPELTPTAIAAGKLLARRLFGQSSELMDYDSV  1337548


 Score = 42.7 bits (99),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 26/37 (70%), Gaps = 1/37 (3%)
 Frame = -1

Query  676      CYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMK  712
                C+ +++C +    R++G H +GPNAGEV QGFA  +K
Sbjct  1333961  CF-QMVCLREREQRILGLHFIGPNAGEVIQGFALGIK  1333854


 Score = 37.0 bits (84),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 0/24 (0%)
 Frame = -3

Query  355      TMTKAIQNHISSLNWGYRLSLREK  378
                 M KA+QN++ SLNWG+R+ L++K
Sbjct  1363548  VMAKAVQNYVKSLNWGHRVQLQDK  1363477


>PTFA01000511.1 Casuarius casuarius isolate B32419 scaffold_510, whole genome 
shotgun sequence
Length=233620

 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 0/50 (0%)
 Frame = -1

Query  688   DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL  737
              +V+G H+ G    E+ QGFA A+K G TK   D T+ IHPT  E   TL
Sbjct  1738  SKVVGLHMQGLGCDEMLQGFAVAIKMGATKANFDSTVAIHPTSAEELVTL  1589


 Score = 42.4 bits (98),  Expect = 0.048, Method: Compositional matrix adjust.
 Identities = 23/48 (48%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query  596   ELTPVAIQSGKLLAQRLF-GASLEKCDYINVPTTVFTPLEYGCCGLSE  642
              L  VAI +G+ LA RLF G    K DY N+PT VF+    G  GL+E
Sbjct  3681  SLFTVAIAAGRKLAHRLFEGMQDSKLDYTNIPTVVFSHPPIGTVGLTE  3538


>PTFA01000313.1 Casuarius casuarius isolate B32419 scaffold_312, whole genome 
shotgun sequence
Length=1059436

 Score = 43.5 bits (101),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%)
 Frame = -3

Query  173     LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP  232
               +I  + VVIFSK+ C +    K+LF  + V    +ELD   +G++ Q+VL ++T  +TV 
Sbjct  307064  IISDNCVVIFSKTTCFYCKMAKKLFEGMNVNYTAVELDVNKNGSQFQDVLEQMTGGRTVS  306885


>PTFA01000127.1 Casuarius casuarius isolate B32419 scaffold_126, whole genome 
shotgun sequence
Length=3114414

 Score = 40.0 bits (92),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +2

Query  540     NTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVP  582
               + +L+ IGR   T+ +GLE IG+++ +K G+IPVN+  QT +P
Sbjct  483188  DVLLVCIGRRPFTKNLGLEDIGIEL-DKKGRIPVNNRFQTKIP  483313



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249595751660


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
