TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo
sapiens # Complete

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000138.1  Casuarius casuarius isolate B32419 scaffold_137, ...  108     7e-23
PTFA01000005.1  Casuarius casuarius isolate B32419 scaffold_4, wh...  93.6    4e-18
PTFA01000112.1  Casuarius casuarius isolate B32419 scaffold_111, ...  89.0    1e-16
PTFA01000511.1  Casuarius casuarius isolate B32419 scaffold_510, ...  51.6    5e-05
PTFA01000127.1  Casuarius casuarius isolate B32419 scaffold_126, ...  41.2    0.061
PTFA01000002.1  Casuarius casuarius isolate B32419 scaffold_1, wh...  34.7    5.9  
PTFA01000339.1  Casuarius casuarius isolate B32419 scaffold_338, ...  34.3    9.7  


>PTFA01000138.1 Casuarius casuarius isolate B32419 scaffold_137, whole genome 
shotgun sequence
Length=2905401

 Score = 108 bits (269),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 62/82 (76%), Gaps = 0/82 (0%)
 Frame = -3

Query  206      ITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVI  265
                + SDD+F L   PGKTLVVGASYVALECAGFL G+GLD T+M+RSI LRGFDQ+M+  V 
Sbjct  1443892  LFSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAERVG  1443713

Query  266      EHMASHGTRFLRGCAPSRVRRL  287
                 HM +HG +F+R   PS+   L
Sbjct  1443712  AHMETHGVKFIRKFVPSQASTL  1443647


 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 41/48 (85%), Gaps = 0/48 (0%)
 Frame = -3

Query  340      KILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSS  387
                K+ V+  E T+VP++YAIGD+++G+ ELTP+AI AG+LL +RL+GGSS
Sbjct  1441726  KVPVNDEEQTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSS  1441583


 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 29/36 (81%), Positives = 32/36 (89%), Gaps = 0/36 (0%)
 Frame = -1

Query  81       GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWE  116
                GLGGTCVNVGCIPKKLMHQAALLG  +QD+  YGW+
Sbjct  1446180  GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKYGWQ  1446073


 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (77%), Gaps = 0/43 (0%)
 Frame = -2

Query  460      VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE  502
                V+G H LGPNAGEVTQGFA  IKCG +   +  T+GIHPTC+E
Sbjct  1438688  VIGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAE  1438560


 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (65%), Gaps = 2/54 (4%)
 Frame = -1

Query  121      VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEH--TVCGVAK  172
                V H+W  M EA+QN++ SLNWG+RV L+++ V Y N    FV+ H   VC V K
Sbjct  1445661  VKHNWEIMVEAIQNYIGSLNWGYRVSLREKSVTYINSYGEFVEPHKIKVCTVFK  1445500


 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/36 (64%), Positives = 30/36 (83%), Gaps = 0/36 (0%)
 Frame = -1

Query  391      DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV  426
                DY NVPTTVFTPLEYG  GL+EE A+  +G++++EV
Sbjct  1441359  DYINVPTTVFTPLEYGSCGLAEERAMEEYGKQNLEV  1441252


 Score = 41.2 bits (95),  Expect = 0.063, Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 22/28 (79%), Gaps = 0/28 (0%)
 Frame = -2

Query  425      EVYHAHYKPLEFTVAGRDASQCYVKMVC  452
                +VYH+ + PLE+T+ GRD + CY K++C
Sbjct  1440347  QVYHSLFWPLEWTIPGRDNNTCYAKIIC  1440264


 Score = 40.8 bits (94),  Expect = 0.078, Method: Compositional matrix adjust.
 Identities = 17/29 (59%), Positives = 23/29 (79%), Gaps = 0/29 (0%)
 Frame = -2

Query  53       ACAKEAAQLGRKVAVVDYVEPSPQGTRWG  81
                + ++EAA LG+KV V+DYV P+P GT WG
Sbjct  1447169  SLSQEAAVLGKKVMVLDYVVPTPLGTSWG  1447083


>PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, whole genome shotgun 
sequence
Length=12021036

 Score = 93.6 bits (231),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 42/67 (63%), Positives = 53/67 (79%), Gaps = 0/67 (0%)
 Frame = +2

Query  218      PGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLR  277
                PGKTLVVGASYVALECAGFL G+GLD T+M+RSI LRGFDQ +++ + E+M  HG  F++
Sbjct  8391083  PGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDIANKIGEYMEEHGINFIK  8391262

Query  278      GCAPSRV  284
                   P +V
Sbjct  8391263  QFVPIKV  8391283


 Score = 65.5 bits (158),  Expect(2) = 5e-14, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 33/39 (85%), Gaps = 0/39 (0%)
 Frame = +1

Query  81       GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ  119
                GLGGTCVNVGCIPKKLMHQAALLG  +QD+  +GW+  +
Sbjct  8387803  GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTE  8387919


 Score = 35.8 bits (81),  Expect(2) = 5e-14, Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = +3

Query  56       KEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNV  89
                +EAA+  +KV V+D+V P+P GT WG   +  N+
Sbjct  8387610  QEAAKYDKKVMVLDFVTPTPLGTSWGKFLSIANL  8387711


 Score = 68.2 bits (165),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 45/56 (80%), Gaps = 0/56 (0%)
 Frame = +1

Query  332      VDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSS  387
                V+ +  T KI V+  E T+VP+IYA+GD+++ + ELTP+AI AGRLLVQRL+GG++
Sbjct  8397568  VNANCRTGKIPVNDEEQTNVPYIYAVGDILQDKLELTPVAIQAGRLLVQRLYGGAT  8397735


 Score = 64.3 bits (155),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (77%), Gaps = 0/43 (0%)
 Frame = +1

Query  460      VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE  502
                V+G H LGPNAGEVTQGFA  IKCG +  Q+  T+GIHP C+E
Sbjct  8405386  VIGFHVLGPNAGEVTQGFAAAIKCGMTKEQLDSTIGIHPVCAE  8405514


 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 51/117 (44%), Gaps = 43/117 (37%)
 Frame = +1

Query  121      VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV-------------  167
                V H+W  M E+VQN++ SLNWG+RV L+++KV Y N    FV  HTV             
Sbjct  8388805  VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVGPHTVKVLPSHV*WVFL*  8388984

Query  168      CGVAKG------------------------------GKEILLSADHIIIATGGRPRY  194
                C + K                               G E L +A+  +IATG RPRY
Sbjct  8388985  CFINKDAFQMEYSFPC*DWKVLTSDSFFVQQATNKRGIEKLYTAERFLIATGERPRY  8389155


 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (81%), Gaps = 0/36 (0%)
 Frame = +3

Query  391      DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV  426
                DY NVPTTVFTPLEYG  G SEE AV + G+E++EV
Sbjct  8400918  DYVNVPTTVFTPLEYGACGYSEESAVEKFGEENIEV  8401025


 Score = 42.4 bits (98),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 14/30 (47%), Positives = 24/30 (80%), Gaps = 0/30 (0%)
 Frame = +3

Query  423      HVEVYHAHYKPLEFTVAGRDASQCYVKMVC  452
                + +VYH+++ PLE+TV  RD ++CY K++C
Sbjct  8403054  YFQVYHSYFWPLEWTVPSRDNNKCYAKIIC  8403143


>PTFA01000112.1 Casuarius casuarius isolate B32419 scaffold_111, whole genome 
shotgun sequence
Length=3387038

 Score = 89.0 bits (219),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 38/51 (75%), Positives = 43/51 (84%), Gaps = 0/51 (0%)
 Frame = -1

Query  75       PQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDW  125
                P GT+WGLGGTCVNVGCIPKKLMHQAALLG  ++DA  YGW ++QPV H W
Sbjct  1364024  PLGTKWGLGGTCVNVGCIPKKLMHQAALLGSALKDAERYGWNISQPVQHTW  1363872


 Score = 85.5 bits (210),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
 Frame = -2

Query  258      QQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG  317
                QQMSS+V EHM S+GT+FL+ C P++V +L   +LQVTW+++  G E+T +FDTV+WA+G
Sbjct  1351378  QQMSSLVTEHMESYGTKFLKKCIPTKVEKLESNKLQVTWKNTDLGTEETDSFDTVMWAVG  1351199

Query  318      RV  319
                ++
Sbjct  1351198  KL  1351193


 Score = 71.2 bits (173),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 32/46 (70%), Positives = 39/46 (85%), Gaps = 0/46 (0%)
 Frame = -1

Query  317      GRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE  362
                GRVPDTR+LNLE  GV T+ +T KI+VD+ EATSVPHIYA+GD+ E
Sbjct  1343006  GRVPDTRTLNLETVGVKTNSETGKIIVDASEATSVPHIYAVGDITE  1342869


 Score = 70.9 bits (172),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 30/43 (70%), Positives = 38/43 (88%), Gaps = 0/43 (0%)
 Frame = -3

Query  482      KCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCXG  524
                +CGA+Y Q+M+T+GIHPTC+EE+ KL I+KRSGLD TVTGC G
Sbjct  1331607  RCGATYPQLMKTIGIHPTCAEEITKLHITKRSGLDATVTGC*G  1331479


 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (86%), Gaps = 4/42 (10%)
 Frame = -2

Query  229      VALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMAS  270
                V+LECAGFLTGIGLDTT+M+RSIPLRGFDQ  +    +H+AS
Sbjct  1354117  VSLECAGFLTGIGLDTTVMIRSIPLRGFDQVST----KHVAS  1354004


 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/61 (51%), Positives = 40/61 (66%), Gaps = 3/61 (5%)
 Frame = -1

Query  424      VEVYHAHYKPLEFTVAGRD--ASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGI  481
                ++ +  H + L      +D     C+ +MVCLRE  Q +LGLHF+GPNAGEV QGFALGI
Sbjct  1334033  LQFHLIHLRALSLDALRKDL*VMYCF-QMVCLREREQRILGLHFIGPNAGEVIQGFALGI  1333857

Query  482      K  482
                K
Sbjct  1333856  K  1333854


 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 3/61 (5%)
 Frame = -1

Query  366      ELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVE  425
                +++P++ M    +VQ+ +     L  +  VPTTVFTPLEYGCVGLSEEEAV  +G +++E
Sbjct  1337405  KVSPVSAMQQLHMVQQ*YFL---LFPHKQVPTTVFTPLEYGCVGLSEEEAVQCYGSDNIE  1337235

Query  426      V  426
                V
Sbjct  1337234  V  1337232


 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/34 (74%), Positives = 30/34 (88%), Gaps = 0/34 (0%)
 Frame = -3

Query  362      EGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV  395
                +GRPELTP AI AG+LL +RLFG SS+LMDYD+V
Sbjct  1337649  QGRPELTPTAIAAGKLLARRLFGQSSELMDYDSV  1337548


 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/24 (92%), Positives = 23/24 (96%), Gaps = 0/24 (0%)
 Frame = -3

Query  198      IEGALEYGITSDDIFWLKESPGKT  221
                I GALEYGITSDD+FWLKESPGKT
Sbjct  1360704  IAGALEYGITSDDLFWLKESPGKT  1360633


 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 20/26 (77%), Positives = 25/26 (96%), Gaps = 0/26 (0%)
 Frame = -1

Query  425      EVYHAHYKPLEFTVAGRDASQCYVKM  450
                +VYHA+YKPLEFTVA RDA+QCY+K+
Sbjct  1335878  QVYHAYYKPLEFTVAERDATQCYMKV  1335801


 Score = 47.8 bits (112),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 23/48 (48%), Positives = 27/48 (56%), Gaps = 0/48 (0%)
 Frame = -2

Query  147      LQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRY  194
                L +RKVKYFNIK SF D HT+ G+ K GKE+    D      G    Y
Sbjct  1362562  LLNRKVKYFNIKGSFSDPHTIRGLTKAGKEVSCCTDFFTCT*GSSGLY  1362419


 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 20/23 (87%), Positives = 23/23 (100%), Gaps = 0/23 (0%)
 Frame = -3

Query  128      MAEAVQNHVKSLNWGHRVQLQDR  150
                MA+AVQN+VKSLNWGHRVQLQD+
Sbjct  1363545  MAKAVQNYVKSLNWGHRVQLQDK  1363477


 Score = 41.6 bits (96),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 32/62 (52%), Gaps = 8/62 (13%)
 Frame = -1

Query  57       EAAQLGRKVAVVDYVEPSPQGTRWGL--------GGTCVNVGCIPKKLMHQAALLGGLIQ  108
                +AAQ GRKVAV+DYVEPSPQG              G C+    +P   M +A L   L+ 
Sbjct  1364705  KAAQFGRKVAVLDYVEPSPQGMEERY*DNICTRELGDCLGDQLVPGSKMAKATLPALLVV  1364526

Query  109      DA  110
                 A
Sbjct  1364525  KA  1364520


 Score = 37.7 bits (86),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 22/25 (88%), Gaps = 0/25 (0%)
 Frame = -3

Query  177      ILLSADHIIIATGGRPRYPTHIEGA  201
                ++++A+ I++ATGGRP+YPTH+  A
Sbjct  1361640  VVITAEKIVLATGGRPKYPTHVSYA  1361566


>PTFA01000511.1 Casuarius casuarius isolate B32419 scaffold_510, whole genome 
shotgun sequence
Length=233620

 Score = 51.6 bits (122),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 0/49 (0%)
 Frame = -1

Query  460   VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR  508
             V+GLH  G    E+ QGFA+ IK GA+ A    TV IHPT +EE+V LR
Sbjct  1732  VVGLHMQGLGCDEMLQGFAVAIKMGATKANFDSTVAIHPTSAEELVTLR  1586


 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 30/52 (58%), Gaps = 1/52 (2%)
 Frame = -2

Query  362   EGRPELTPIAIMAGRLLVQRLFGGSSDL-MDYDNVPTTVFTPLEYGCVGLSE  412
              G   L  +AI AGR L  RLF G  D  +DY N+PT VF+    G VGL+E
Sbjct  3693  SGSVSLFTVAIAAGRKLAHRLFEGMQDSKLDYTNIPTVVFSHPPIGTVGLTE  3538


 Score = 35.8 bits (81),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (53%), Gaps = 4/51 (8%)
 Frame = -1

Query  284   VRRLPDGQLQVTWEDSTTGKEDT----GTFDTVLWAIGRVPDTRSLNLEKA  330
             V R P G L VT   S  G + T       D +LWA+GRVP+T  L L++ 
Sbjct  4594  VARSPGGLLDVTVTSSMPGHKPTVGVIQDVDCLLWAVGRVPNTDGLCLDQV  4442


>PTFA01000127.1 Casuarius casuarius isolate B32419 scaffold_126, whole genome 
shotgun sequence
Length=3114414

 Score = 41.2 bits (95),  Expect = 0.061, Method: Compositional matrix adjust.
 Identities = 28/61 (46%), Positives = 37/61 (61%), Gaps = 2/61 (3%)
 Frame = +2

Query  354     IYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEE  413
               IYAIGDVV G P L   A   G L V+ + GG+  + DY+ VP+ ++T  E   VG SEE
Sbjct  483707  IYAIGDVVAG-PMLAHKAEDEGILCVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEE  483880

Query  414     E  414
               +
Sbjct  483881  Q  483883


>PTFA01000002.1 Casuarius casuarius isolate B32419 scaffold_1, whole genome shotgun 
sequence
Length=14296948

 Score = 34.7 bits (78),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 31/71 (44%), Gaps = 0/71 (0%)
 Frame = -1

Query  364      RPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEH  423
                +  LT I   A R L+  L G     + Y      V   L Y     S +E V+RHG  H
Sbjct  4869643  QSRLTAIGTDAQRHLLVSLQGSEDIFLTYQGTKDQVIPTLTYSSWTESLQELVSRHGPFH  4869464

Query  424      VEVYHAHYKPL  434
                ++V+H   K L
Sbjct  4869463  MDVFHTSPKVL  4869431


>PTFA01000339.1 Casuarius casuarius isolate B32419 scaffold_338, whole genome 
shotgun sequence
Length=901290

 Score = 34.3 bits (77),  Expect = 9.7, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 33/72 (46%), Gaps = 15/72 (21%)
 Frame = -3

Query  271     HGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKA  330
               H T  LR  A S   +LP+G  Q+   D T  ++DT T                L+LEK 
Sbjct  559162  HTTGVLRSAASSHKMQLPEGSRQLKLSDQTEFQQDTST---------------KLSLEKV  559028

Query  331     GVDTSPDTQKIL  342
                +++ P  ++IL
Sbjct  559027  SLNSIPREKEIL  558992



Lambda      K        H        a         alpha
   0.320    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 158619092426


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
