TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo sapiens
# Complete

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000022.1  Casuarius casuarius isolate B32419 scaffold_21, w...  32.7    5.8  


>PTFA01000022.1 Casuarius casuarius isolate B32419 scaffold_21, whole genome 
shotgun sequence
Length=7515878

 Score = 32.7 bits (73),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
 Frame = +1

Query  42       FGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEA  75
                FGC +CR +   LS +   L  H VRL   GP A
Sbjct  3815770  FGCFLCRMVCYCLSYVTIFLTCHAVRLSPFGPLA  3815871



Lambda      K        H        a         alpha
   0.322    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 31807102687


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
