TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo sapiens
# Complete

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000024.1  Casuarius casuarius isolate B32419 scaffold_23, w...  84.3    4e-17
PTFA01000006.1  Casuarius casuarius isolate B32419 scaffold_5, wh...  32.7    7.6  


>PTFA01000024.1 Casuarius casuarius isolate B32419 scaffold_23, whole genome 
shotgun sequence
Length=7434306

 Score = 84.3 bits (207),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (87%), Gaps = 0/52 (0%)
 Frame = +3

Query  142      QSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGNNIHFIHR  193
                QSPH+KSN+L GS++S+WRA+TGP FDFQGDPAQQGGTLILGPG  +  + +
Sbjct  5217633  QSPHVKSNMLLGSIRSMWRAMTGPAFDFQGDPAQQGGTLILGPGELVCSVCK  5217788


 Score = 65.9 bits (159),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 32/51 (63%), Positives = 38/51 (75%), Gaps = 2/51 (4%)
 Frame = +1

Query  102      HHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHIKSNLLS  152
                H ++PFC LTGY HE+YVDP+REIYK LGMKRGE   + G S   KSN L+
Sbjct  5217235  HILQPFCSLTGYIHEMYVDPQREIYKTLGMKRGEGNNTPGTSG--KSNFLA  5217381


 Score = 63.2 bits (152),  Expect = 6e-10, Method: Composition-based stats.
 Identities = 25/37 (68%), Positives = 32/37 (86%), Gaps = 0/37 (0%)
 Frame = +1

Query  184      PGNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNR  220
                PGN +HF+H D++RLDH PIN+VLQL GV+ VNFTN+
Sbjct  5218417  PGNEVHFLHLDKHRLDHAPINTVLQLAGVKTVNFTNK  5218527


 Score = 47.0 bits (110),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (81%), Gaps = 0/31 (0%)
 Frame = +1

Query  67       LCYICKEYVEDLAKIPRSFLQEANVTLIVIG  97
                LCY CKEYVEDLAK+P+SFL+ + + LI + 
Sbjct  5215267  LCYTCKEYVEDLAKVPKSFLEVSTMPLICVC  5215359


 Score = 33.9 bits (76),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 17/18 (94%), Gaps = 0/18 (0%)
 Frame = +2

Query  88       EANVTLIVIGQSSYHHIE  105
                +ANV LIVIGQSSYHHI+
Sbjct  5216768  DANVRLIVIGQSSYHHIK  5216821


>PTFA01000006.1 Casuarius casuarius isolate B32419 scaffold_5, whole genome shotgun 
sequence
Length=11953420

 Score = 32.7 bits (73),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 13/29 (45%), Positives = 21/29 (72%), Gaps = 0/29 (0%)
 Frame = -3

Query  75       VEDLAKIPRSFLQEANVTLIVIGQSSYHH  103
                V+DL ++ RSFL  +N+ L++IG +SY  
Sbjct  2994695  VQDLLELARSFLCFSNLWLLIIGSNSYRK  2994609



Lambda      K        H        a         alpha
   0.320    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 42274594425


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
