TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo sapiens #
Complete

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000026.1  Casuarius casuarius isolate B32419 scaffold_25, w...  94.4    6e-21
PTFA01000348.1  Casuarius casuarius isolate B32419 scaffold_347, ...  32.7    6.0  


>PTFA01000026.1 Casuarius casuarius isolate B32419 scaffold_25, whole genome 
shotgun sequence
Length=7254047

 Score = 94.4 bits (233),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 44/48 (92%), Positives = 46/48 (96%), Gaps = 0/48 (0%)
 Frame = -1

Query  83       RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACM  130
                RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV + +
Sbjct  6707609  RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVSSLL  6707466


 Score = 85.5 bits (210),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 39/41 (95%), Positives = 41/41 (100%), Gaps = 0/41 (0%)
 Frame = -2

Query  155      DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS  195
                DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHM+S+PHHRS
Sbjct  6704398  DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS  6704276


 Score = 75.5 bits (184),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 36/38 (95%), Positives = 36/38 (95%), Gaps = 0/38 (0%)
 Frame = -1

Query  46       CVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR  83
                 VS GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR
Sbjct  6708872  SVS*GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR  6708759


 Score = 63.5 bits (153),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 29/29 (100%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
 Frame = -2

Query  126      VYACMMVFFLSNMIENQCMSTGAFEITLN  154
                VYACMMVFFLSNMIENQCMSTGAFEITLN
Sbjct  6705985  VYACMMVFFLSNMIENQCMSTGAFEITLN  6705899


 Score = 37.4 bits (85),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 15/19 (79%), Positives = 18/19 (95%), Gaps = 0/19 (0%)
 Frame = -3

Query  27       PSKRLKMQYATGPLLKFQI  45
                P+K+L+M YATGPLLKFQI
Sbjct  6710169  PAKKLRMAYATGPLLKFQI  6710113


>PTFA01000348.1 Casuarius casuarius isolate B32419 scaffold_347, whole genome 
shotgun sequence
Length=850344

 Score = 32.7 bits (73),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (61%), Gaps = 1/33 (3%)
 Frame = +3

Query  111     GMQAPSIWQWGQENKVYACMMVFFLSNMIENQC  143
               GM+ P +W W    ++ AC +VFF  ++I N C
Sbjct  694959  GMRCP-VWTWCSRQRLAACRIVFFSCSLIINLC  695054



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 30599238028


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
