TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000034.1  Casuarius casuarius isolate B32419 scaffold_33, w...  82.8    5e-17
PTFA01000041.1  Casuarius casuarius isolate B32419 scaffold_40, w...  52.8    1e-06
PTFA01000482.1  Casuarius casuarius isolate B32419 scaffold_481, ...  43.1    0.002


>PTFA01000034.1 Casuarius casuarius isolate B32419 scaffold_33, whole genome 
shotgun sequence
Length=6636697

 Score = 82.8 bits (203),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 43/56 (77%), Gaps = 1/56 (2%)
 Frame = +2

Query  137      QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL  192
                QCGAHLGHIFDDGPRPTGKRYC NSA+LSF P D +   E GSG   PA+  KAEL
Sbjct  5787971  QCGAHLGHIFDDGPRPTGKRYCTNSASLSFKPVDKNNAGE-GSGNTHPARTGKAEL  5788135


 Score = 67.4 bits (163),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 31/33 (94%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +3

Query  36       RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE  68
                RDKK+CKVVFSQ+ELRKRLTPLQYHVTQEKGTE
Sbjct  5733624  RDKKDCKVVFSQEELRKRLTPLQYHVTQEKGTE  5733722


 Score = 66.2 bits (160),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 28/33 (85%), Positives = 31/33 (94%), Gaps = 0/33 (0%)
 Frame = +3

Query  105      GWPSFHDVINSEAITFTDDFSYGMHRVETSCSQ  137
                GWPSF+DVI+  AITFTDDFSYGMHR+ETSCSQ
Sbjct  5782866  GWPSFYDVISPNAITFTDDFSYGMHRIETSCSQ  5782964


 Score = 56.6 bits (135),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 25/27 (93%), Positives = 25/27 (93%), Gaps = 0/27 (0%)
 Frame = +3

Query  69       SAFEGEYTHHKDPGIYKCVVCGTPLFK  95
                SAFEGEYTHHK  GIYKCVVCGTPLFK
Sbjct  5735493  SAFEGEYTHHKAQGIYKCVVCGTPLFK  5735573


>PTFA01000041.1 Casuarius casuarius isolate B32419 scaffold_40, whole genome 
shotgun sequence
Length=6069262

 Score = 52.8 bits (125),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 20/30 (67%), Positives = 26/30 (87%), Gaps = 0/30 (0%)
 Frame = +1

Query  137     QCGAHLGHIFDDGPRPTGKRYCINSAALSF  166
               QC AHLGH+FDDGP P+ +R+CINS +L+F
Sbjct  355471  QCDAHLGHVFDDGPAPSRQRFCINSVSLNF  355560


 Score = 33.5 bits (75),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 16/23 (70%), Gaps = 0/23 (0%)
 Frame = +1

Query  73      GEYTHHKDPGIYKCVVCGTPLFK  95
               G Y ++ +PGIY CV C  PLF+
Sbjct  349780  GIYLNNAEPGIYYCVCCNAPLFR  349848


 Score = 32.7 bits (73),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = +1

Query  88      VCGTPLFKSETKFDSGSGWPSFHDVI-------NSEAITFTDDFSYGMHRVETSCSQ  137
               + G P + SE K++SG+GWPSF +         ++  I    D S G  R E  C Q
Sbjct  353758  ISGFP-YSSEKKYNSGTGWPSFSEAYGTCGRDESNTNIMRQPDNSLGSTRTEVICKQ  353925


>PTFA01000482.1 Casuarius casuarius isolate B32419 scaffold_481, whole genome 
shotgun sequence
Length=298593

 Score = 43.1 bits (100),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 17/43 (40%), Positives = 28/43 (65%), Gaps = 0/43 (0%)
 Frame = +2

Query  81      PGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDD  123
               PGIY C  CG  LF S TK++  S WP+F + I+ ++++  ++
Sbjct  163175  PGIYVCAKCGYELFSSRTKYEHSSPWPAFTETIHQDSVSKYEE  163303


 Score = 34.3 bits (77),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 23/37 (62%), Gaps = 1/37 (3%)
 Frame = +3

Query  133     TSCSQCGAHLGHIF-DDGPRPTGKRYCINSAALSFTP  168
                SC +CG  LGH F +DGP+    R+ I S++L F P
Sbjct  163437  VSCGKCGNGLGHEFLNDGPKRGQSRF*IFSSSLKFIP  163547



Lambda      K        H        a         alpha
   0.316    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 29794230538


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
