TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens #
Complete

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000351.1  Casuarius casuarius isolate B32419 scaffold_350, ...  142     5e-35
PTFA01000073.1  Casuarius casuarius isolate B32419 scaffold_72, w...  107     2e-23
PTFA01000420.1  Casuarius casuarius isolate B32419 scaffold_419, ...  67.4    3e-10
PTFA01000005.1  Casuarius casuarius isolate B32419 scaffold_4, wh...  64.7    2e-09


>PTFA01000351.1 Casuarius casuarius isolate B32419 scaffold_350, whole genome 
shotgun sequence
Length=840048

 Score = 142 bits (357),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 86/88 (98%), Positives = 87/88 (99%), Gaps = 0/88 (0%)
 Frame = +2

Query  104     DGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGvsvfvlylllwvv  163
               DGVDGKQARRTNSSTPLGELFDHGLDSW+CVYFVVTVYS FGRGSTGVSVFVLYLLLWVV
Sbjct  579164  DGVDGKQARRTNSSTPLGELFDHGLDSWACVYFVVTVYSTFGRGSTGVSVFVLYLLLWVV  579343

Query  164     lfsfILSHWEKYNTGILFLPWGYDISQV  191
               LFSFILSHWEKYNTGILFLPWGYDISQV
Sbjct  579344  LFSFILSHWEKYNTGILFLPWGYDISQV  579427


 Score = 97.1 bits (240),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 56/71 (79%), Gaps = 0/71 (0%)
 Frame = +2

Query  243     FRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFAN  302
               FR+YKNNTLK +SVYE  +PL SP LLF+L T WI  SP+DILE+HPR+FYFMVGTAFAN
Sbjct  583418  FRAYKNNTLKHHSVYEITLPLVSPVLLFVLCTTWIFVSPTDILEVHPRLFYFMVGTAFAN  583597

Query  303     STCQLIVCQMS  313
                +   +  ++S
Sbjct  583598  ISVSALCSRLS  583630


 Score = 72.8 bits (177),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 41/52 (79%), Gaps = 0/52 (0%)
 Frame = +2

Query  192     TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFF  243
               TIS VYIVTA+VGVEAWY PFLFNFLYRDLFTAMIIG  L V   +   NF+
Sbjct  581171  TISIVYIVTAIVGVEAWYAPFLFNFLYRDLFTAMIIGKKLHVEACLLNTNFY  581326


 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 24/28 (86%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = +2

Query  18      YKYSAVDTNPLSLYVMHPFWNTIVKVFP  45
               ++YSAVD+NPLSLYVMHPFWNTIVKV P
Sbjct  576176  FQYSAVDSNPLSLYVMHPFWNTIVKVRP  576259


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 35/37 (95%), Gaps = 0/37 (0%)
 Frame = +2

Query  43      VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA  79
               +FPTWLAPNLITFSGFLL+VFNF LMAYFDPDFYAS 
Sbjct  576575  IFPTWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASG  576685


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%), Gaps = 0/66 (0%)
 Frame = +1

Query  305     CQLIVCQMSSTRCPTLNWllvplflvvlvvnlgvASYVESIllytlttaftlaHIHYGVR  364
               CQLIVCQMSSTRC  LNW+L+P+ +V+ VV  G+A   E++LLY LTT  TLAHIHYGV 
Sbjct  584413  CQLIVCQMSSTRCQPLNWMLIPIAVVLFVVMSGLAPNSETLLLYLLTTLLTLAHIHYGVI  584592

Query  365     VVKQLS  370
               VV++LS
Sbjct  584593  VVRKLS  584610


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 26/36 (72%), Gaps = 0/36 (0%)
 Frame = +1

Query  77      ASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQAR  112
               ++AP H+HVP  VW+VVG+LNFVAYTL      + R
Sbjct  578650  SAAPDHQHVPSGVWVVVGLLNFVAYTLGKTLSSRDR  578757


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
 Frame = +3

Query  366     VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL  397
               V QLS HF I PFSL+KP +D LG+EE+ I L
Sbjct  587325  VSQLSRHFNIRPFSLKKPTTD*LGVEEEKISL  587420


>PTFA01000073.1 Casuarius casuarius isolate B32419 scaffold_72, whole genome 
shotgun sequence
Length=4366011

 Score = 107 bits (267),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 60/91 (66%), Positives = 75/91 (82%), Gaps = 2/91 (2%)
 Frame = -1

Query  103      LDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGR--GSTGvsvfvlylll  160
                LD +DGK ARRT SS+PLGELFDHGLDSW+   FV++ +S+  R  G TGVSV+ +Y+ L
Sbjct  3865431  LDSIDGKHARRTQSSSPLGELFDHGLDSWATSIFVLSFFSVCSRDNGKTGVSVYTMYIYL  3865252

Query  161      wvvlfsfILSHWEKYNTGILFLPWGYDISQV  191
                 +VLF+F+ SHWEKYNTG+LFLPWGYD+SQV
Sbjct  3865251  SIVLFNFMCSHWEKYNTGVLFLPWGYDLSQV  3865159


 Score = 53.5 bits (127),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 32/70 (46%), Positives = 46/70 (66%), Gaps = 0/70 (0%)
 Frame = -3

Query  243      FRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFAN  302
                +R++   TLK  S+YE ++PL SP LLFIL T W++ SP +IL   PR+F +MVG AF+N
Sbjct  3845626  YRAHLKKTLKNGSLYEGLLPLVSPLLLFILLTVWVVLSPGNILAKQPRLFLWMVGVAFSN  3845447

Query  303      STCQLIVCQM  312
                    + V  +
Sbjct  3845446  VIVSIFVVMV  3845417


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 18/44 (41%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = -1

Query  42       KVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHV  85
                ++ P W+APN++TFSGF++++ N+ L++++D D+ AS   + HV
Sbjct  3871647  QIVPLWIAPNMLTFSGFVMILVNYFLISFYDWDYTASG-KYPHV  3871519


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%), Gaps = 0/25 (0%)
 Frame = -2

Query  19       KYSAVDTNPLSLYVMHPFWNTIVKV  43
                +YSAVDTNPLS+YVM P W+ I+KV
Sbjct  3877799  QYSAVDTNPLSVYVMQPIWDKIIKV  3877725


 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 15/47 (32%), Positives = 28/47 (60%), Gaps = 0/47 (0%)
 Frame = -1

Query  197      YIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFF  243
                Y++T  +GVE W++PFLF +   D+   ++IG    + + +   N+F
Sbjct  3858429  YLLTGAIGVEIWHKPFLFGYYITDVLVILLIGKCPGLWITVLFFNYF  3858289


 Score = 33.9 bits (76),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (63%), Gaps = 0/59 (0%)
 Frame = -2

Query  305      CQLIVCQMSSTRCPTLNWllvplflvvlvvnlgvASYVESIllytlttaftlaHIHYGV  363
                C++I+CQMSSTR    +W+L PL LVV     G+  + E I+L     + T AH+HYG+
Sbjct  3841526  CKVIICQMSSTRPELFHWILFPLALVVYAAISGLLGWTEEIVLGVFAMSATAAHVHYGI  3841350


>PTFA01000420.1 Casuarius casuarius isolate B32419 scaffold_419, whole genome 
shotgun sequence
Length=495953

 Score = 67.4 bits (163),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 30/48 (63%), Positives = 34/48 (71%), Gaps = 0/48 (0%)
 Frame = +3

Query  85      VPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS  132
                P W +I      F+  +LD +DGKQARRTNSSTPLGELFDHG DS S
Sbjct  209166  APPWAYIACACGLFIYQSLDAIDGKQARRTNSSTPLGELFDHGCDSLS  209309


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query  7       VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL  66
               +S  QL   +++KY +   + L   +M  +W  +V   P W+APNLIT  G L+ +   L
Sbjct  205541  LSKHQLKRLEEHKYQSAGRSLLE-PLMQGYWEWLVGRVPAWIAPNLITIIGLLINICTTL  205717

Query  67      LMAYFDP  73
               L+ Y+ P
Sbjct  205718  LLVYYCP  205738


>PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, whole genome shotgun 
sequence
Length=12021036

 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 0/49 (0%)
 Frame = +3

Query  84       HVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS  132
                  P W +I+  +  F+  +LD +DGKQARRTNSS+PLGELFDHG DS S
Sbjct  7286373  QAPFWAYILGALGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSIS  7286519


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/76 (33%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query  7        VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL  66
                +SP QL   ++++YSA   + L    + P+W  +V+  P WLAPN IT  G LL     L
Sbjct  7277600  LSPAQLKRLEQHRYSAAGRS-LLEPSLQPYWTWLVEQVPPWLAPNAITLGGLLLNCLTAL  7277776

Query  67       LMAYFDPDFYASAPGH  82
                 +    P      P  
Sbjct  7277777  PLIACCPSATEQVPAR  7277824



Lambda      K        H        a         alpha
   0.327    0.141    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 108297489293


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
