TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens #
Complete

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000454.1  Casuarius casuarius isolate B32419 scaffold_453, ...  51.6    2e-15
PTFA01000165.1  Casuarius casuarius isolate B32419 scaffold_164, ...  31.6    3.3  


>PTFA01000454.1 Casuarius casuarius isolate B32419 scaffold_453, whole genome 
shotgun sequence
Length=369983

 Score = 51.6 bits (122),  Expect(2) = 2e-15, Method: Compositional matrix adjust.
 Identities = 23/34 (68%), Positives = 28/34 (82%), Gaps = 0/34 (0%)
 Frame = -2

Query  89      SSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS  122
               ++ ELW+GI+KGPPRKLKFPEP  VVE LK  L+
Sbjct  338218  AAVELWSGIRKGPPRKLKFPEPAAVVEALKSSLA  338117


 Score = 50.4 bits (119),  Expect(2) = 2e-15, Method: Compositional matrix adjust.
 Identities = 26/46 (57%), Positives = 32/46 (70%), Gaps = 0/46 (0%)
 Frame = -1

Query  45      RVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS  90
               RV+GRNAAA+S+ALR     L V++NP  PRR SFEV L    GS+
Sbjct  338378  RVFGRNAAAVSEALRGAVAHLAVEINPAPPRRNSFEVALGGGSGSA  338241


>PTFA01000165.1 Casuarius casuarius isolate B32419 scaffold_164, whole genome 
shotgun sequence
Length=2383576

 Score = 31.6 bits (70),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 21/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (9%)
 Frame = +1

Query  34       ATVVIEHCTSURVYGRNAAA------LSQALRLEAPELPVKVNPTKPRRGSFEVTL-LRP  86
                AT++   C  + V+    +       L +A R+    LPV      PR  +  + L +  
Sbjct  2172202  ATLLSVFCCQCFVFNEETSFYFALRPLQEASRIHCVILPVSAQQPDPRVSALGIDLPVAH  2172381

Query  87       DGSSAELWTGIKKGPPRKL  105
                  +S  LW G+ + PPR L
Sbjct  2172382  PPNSGSLWRGVSQTPPRLL  2172438



Lambda      K        H        a         alpha
   0.313    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10067290025


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
