TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo sapiens
# Complete

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000049.1  Casuarius casuarius isolate B32419 scaffold_48, w...  67.8    9e-13
PTFA01000066.1  Casuarius casuarius isolate B32419 scaffold_65, w...  30.4    9.6  


>PTFA01000049.1 Casuarius casuarius isolate B32419 scaffold_48, whole genome 
shotgun sequence
Length=5589765

 Score = 67.8 bits (164),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
 Frame = -2

Query  12      LVPAFGLRLLLATVLQ-AVSAFGAEFSSEACRELGFssnllcsscdllGQFNLLQLDPDC  70
               L     L L  +T+L   V+ +GA+ SSEACRELGFSSNLLCSSC+LLGQF+L QLDP C
Sbjct  393221  LFYTINLILKCSTILIFQVTVYGAQLSSEACRELGFSSNLLCSSCNLLGQFSLNQLDPFC  393042

Query  71      RGCCQEEAQFETKKL  85
               R CCQEEAQ ET+K+
Sbjct  393041  RQCCQEEAQLETRKV  392997


 Score = 40.8 bits (94),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%), Gaps = 0/21 (0%)
 Frame = -3

Query  85      LYAGAILEVCGUKLGRFPQVQ  105
               LYAGA+LEVCG KLGRFPQVQ
Sbjct  380863  LYAGAVLEVCG*KLGRFPQVQ  380801


 Score = 33.1 bits (74),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 0/28 (0%)
 Frame = -2

Query  97      KLGRFPQVQVCPWFRPCIKAFGRQWEHC  124
               K   F    VC WF PC KA GR WEHC
Sbjct  369668  KETHFFLSTVCAWF*PCTKAAGR*WEHC  369585


>PTFA01000066.1 Casuarius casuarius isolate B32419 scaffold_65, whole genome 
shotgun sequence
Length=4617235

 Score = 30.4 bits (67),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 13/32 (41%), Positives = 16/32 (50%), Gaps = 0/32 (0%)
 Frame = -1

Query  87      AGAILEVCGUKLGRFPQVQVCPWFRPCIKAFG  118
               AGA     G +  RFP  Q  PW  P +K+ G
Sbjct  234406  AGAAQPESGTRARRFPSSQARPWLSPRLKSHG  234311



Lambda      K        H        a         alpha
   0.329    0.142    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10067130825


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
