TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000012_1.0 # Protein # Methionine sulfoxide reductase A (MsrA)
# Homo sapiens # Complete

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000233.1  Casuarius casuarius isolate B32419 scaffold_232, ...  79.7    2e-15
PTFA01000044.1  Casuarius casuarius isolate B32419 scaffold_43, w...  68.6    1e-11
PTFA01000150.1  Casuarius casuarius isolate B32419 scaffold_149, ...  33.1    5.1  
PTFA01000202.1  Casuarius casuarius isolate B32419 scaffold_201, ...  32.3    9.5  
PTFA01000051.1  Casuarius casuarius isolate B32419 scaffold_50, w...  32.3    9.7  


>PTFA01000233.1 Casuarius casuarius isolate B32419 scaffold_232, whole genome 
shotgun sequence
Length=1552784

 Score = 79.7 bits (195),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 36/43 (84%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
 Frame = -2

Query  71      GMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKT  113
               GMGCFWGAERKFW  KGVYSTQVG+AGG+T NPTYKEVCS K+
Sbjct  339487  GMGCFWGAERKFWRQKGVYSTQVGYAGGFTPNPTYKEVCSGKS  339359


 Score = 72.0 bits (175),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = -1

Query  181     KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGIKK  235
               +VL+E GFG ITT+IRE   FYYAEDYHQQYLSKNP GYCGLGGTG+SCP+GI K
Sbjct  198218  QVLTEGGFGTITTEIREAPEFYYAEDYHQQYLSKNPGGYCGLGGTGLSCPIGINK  198054


 Score = 70.9 bits (172),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 38/47 (81%), Gaps = 0/47 (0%)
 Frame = -1

Query  100     TSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQG  146
               T+N  +  V   KTGH E VRVVYQPE++SFE+LLKVFWENHDPTQG
Sbjct  303671  TNNSRFYFVF*GKTGHTEAVRVVYQPENISFEKLLKVFWENHDPTQG  303531


 Score = 62.8 bits (151),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 32/37 (86%), Gaps = 0/37 (0%)
 Frame = -3

Query  146     GMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKV  182
               GMRQGND GTQYRSAIY  S +QMEAAL SKE+YQKV
Sbjct  286602  GMRQGNDFGTQYRSAIYTFSQEQMEAALRSKEDYQKV  286492


 Score = 50.8 bits (120),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 21/23 (91%), Positives = 23/23 (100%), Gaps = 0/23 (0%)
 Frame = -3

Query  49      KHHVNGNRTVEPFPEGTQMAVFG  71
               KHHV+GNRTVEPFPEGTQMA+FG
Sbjct  366828  KHHVSGNRTVEPFPEGTQMALFG  366760


>PTFA01000044.1 Casuarius casuarius isolate B32419 scaffold_43, whole genome 
shotgun sequence
Length=5744358

 Score = 68.6 bits (166),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 28/38 (74%), Positives = 34/38 (89%), Gaps = 0/38 (0%)
 Frame = -2

Query  71       GMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEV  108
                GMGCFWGAE+ FW + GV+STQVG+AGG+T NPTY+EV
Sbjct  4943498  GMGCFWGAEQLFWKMPGVFSTQVGYAGGFTPNPTYEEV  4943385


 Score = 64.7 bits (156),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 25/34 (74%), Positives = 30/34 (88%), Gaps = 0/34 (0%)
 Frame = -1

Query  113      TGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQG  146
                TGHAEVVRVV+ P  +S+E+LL+ FWENHDPTQG
Sbjct  4942443  TGHAEVVRVVFDPRELSYEDLLRAFWENHDPTQG  4942342


 Score = 41.6 bits (96),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 0/36 (0%)
 Frame = -3

Query  147      MRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKV  182
                MRQ  D GTQYRS IY   A+Q EAA  S+  YQ+V
Sbjct  4941874  MRQQKDVGTQYRSVIYTLGAEQGEAARRSRAAYQEV  4941767


 Score = 35.0 bits (79),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (58%), Gaps = 0/33 (0%)
 Frame = -1

Query  39       GRKEQTPVAAKHHVNGNRTVEPFPEGTQMAVFG  71
                G     P  A H VNGN T+ PFP   Q+A+FG
Sbjct  4943802  GLTPCPPPPATHAVNGNPTLPPFPAEMQVAIFG  4943704


>PTFA01000150.1 Casuarius casuarius isolate B32419 scaffold_149, whole genome 
shotgun sequence
Length=2596538

 Score = 33.1 bits (74),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 37/83 (45%), Gaps = 6/83 (7%)
 Frame = +1

Query  1       MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKHHVNGNRTVEP  60
               +L    +   L L+ +L  +P + N +SN++   +A     ++ P+  KHH  G     P
Sbjct  675388  LLHCMEKTASLNLIQALTVLPALANPSSNVLCSSQAHACVSQRRPLYCKHHHQGT----P  675555

Query  61      FPEGTQMAVFGMGCFWGAERKFW  83
                   T++    + CF G   + W
Sbjct  675556  LRGITELCF--IICFAGRSLRLW  675618


>PTFA01000202.1 Casuarius casuarius isolate B32419 scaffold_201, whole genome 
shotgun sequence
Length=1887227

 Score = 32.3 bits (72),  Expect = 9.5, Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 20/41 (49%), Gaps = 0/41 (0%)
 Frame = -2

Query  133      LLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAAL  173
                LLKVFWEN  PT  +R   + G      +   S  Q+  AL
Sbjct  1358152  LLKVFWENEHPT*RIRNCRERGCSQGHTVTHGSTAQVHCAL  1358030


>PTFA01000051.1 Casuarius casuarius isolate B32419 scaffold_50, whole genome 
shotgun sequence
Length=5510660

 Score = 32.3 bits (72),  Expect = 9.7, Method: Compositional matrix adjust.
 Identities = 15/56 (27%), Positives = 29/56 (52%), Gaps = 3/56 (5%)
 Frame = -1

Query  99      YTSNPTYKEVCSEKTGHAEVVRV---VYQPEHMSFEELLKVFWENHDPTQGMRQGN  151
               +  N ++    ++K     ++R+   +   E +SF+ L++ FW  H PTQ  +QG 
Sbjct  947216  WKENSSFYGDFTQKVSQGLILRMGFFLKFVELLSFQSLIQPFWNTHAPTQKQKQGK  947049



Lambda      K        H        a         alpha
   0.317    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 45898131090


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
