TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Homo
sapiens # Complete

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000029.1  Casuarius casuarius isolate B32419 scaffold_28, w...  168     7e-46
PTFA01000143.1  Casuarius casuarius isolate B32419 scaffold_142, ...  141     2e-36
PTFA01000081.1  Casuarius casuarius isolate B32419 scaffold_80, w...  100     1e-22
PTFA01000036.1  Casuarius casuarius isolate B32419 scaffold_35, w...  33.1    5.8  
PTFA01000055.1  Casuarius casuarius isolate B32419 scaffold_54, w...  32.7    8.5  


>PTFA01000029.1 Casuarius casuarius isolate B32419 scaffold_28, whole genome 
shotgun sequence
Length=6902520

 Score = 168 bits (425),  Expect = 7e-46, Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 115/178 (65%), Gaps = 6/178 (3%)
 Frame = -2

Query  75       LKVRW--QRLE--DTTELGGLAPNCPVVRLSGQ-RCNIWEFMQGNRPLVLNFGSCTUPSF  129
                LK  W  Q+L+   +  +G LAPN  V++L GQ R  I +F +G RPL+LNFGSCT P F
Sbjct  2958044  LKAVWHGQKLDFFKSAHVGSLAPNPEVIQLDGQKRLRILDFARGKRPLILNFGSCT*PPF  2957865

Query  130      MFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNNM-DIRNHQNLQDRLQAAHLLL  188
                M +   F+RL   F  IADFL++YIEEAH SDGW   +    I  HQ LQDRL+AA L+ 
Sbjct  2957864  MARLRSFRRLAAHFVDIADFLLVYIEEAHPSDGWVSSDAAYKIPKHQCLQDRLRAAQLMR  2957685

Query  189      ARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVRAVLEK  246
                  +P CP+ VDTM N SS  Y A  ERLYIIQE +++Y+G  GP  Y   E+R+ L++
Sbjct  2957684  EGAPDCPLAVDTMDNASSAAYGAYFERLYIIQEEKVMYQGGRGPEGYKISELRSWLDQ  2957511


>PTFA01000143.1 Casuarius casuarius isolate B32419 scaffold_142, whole genome 
shotgun sequence
Length=2780045

 Score = 141 bits (355),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 107/185 (58%), Gaps = 24/185 (13%)
 Frame = +2

Query  86      TELGGLAPNCPVVRLS-----------------GQRCNIWEFMQGNRPLVLNFGSCTUPS  128
                +LGG APN  V+ ++                 G +C++ +F    RPLV+NFGS T P 
Sbjct  674183  VKLGGEAPNSSVIHVANGSDRSTNSWKSVGGKCGSKCHLLDFANSERPLVVNFGSAT*PP  674362

Query  129     FMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAF----KNNMDIRNHQNLQDRLQAA  184
               F  +   F +L+E+FS +ADFL++YI+EAH SDGWA      ++ +++ H+N +DR  AA
Sbjct  674363  FTNQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVKKHRNQEDRCAAA  674542

Query  185     HLLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVR  241
               H LL R    PQC VV D M N ++  Y    ER+ I+Q  +I Y G  GP+ YN +EVR
Sbjct  674543  HQLLERFSLPPQCQVVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYNLQEVR  674722

Query  242     AVLEK  246
                 LE+
Sbjct  674723  LWLEQ  674737


>PTFA01000081.1 Casuarius casuarius isolate B32419 scaffold_80, whole genome 
shotgun sequence
Length=3960531

 Score = 100 bits (250),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 8/104 (8%)
 Frame = +3

Query  126      UPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNNMDIRNHQNLQDRLQAAH  185
                +  +M  F   K L++ F + +   V+        DGWAFKNN+ I+NH++L+DR  AA 
Sbjct  2025765  CDIYMLHFHS*KCLLKMFLAKSFSFVL--------DGWAFKNNVVIKNHRSLEDRRTAAQ  2025920

Query  186      LLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGK  229
                 LL ++P CPVV+DTM+N SS  YAALPERLY++Q G+++YK K
Sbjct  2025921  FLLEKNPLCPVVLDTMENLSSSKYAALPERLYLLQGGKVIYKVK  2026052


 Score = 92.4 bits (228),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 55/81 (68%), Gaps = 0/81 (0%)
 Frame = +3

Query  33       FPDRVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLA  92
                FP  +KR IL  GE++ M  NP F ++NW PTFFS  YF FVLKV+W+RLED    G  A
Sbjct  2022531  FPKAMKRYILKQGERSRMNENPKFEYENWGPTFFSFNYFLFVLKVKWKRLEDEAYEGHPA  2022710

Query  93       PNCPVVRLSGQRCNIWEFMQG  113
                PN PVV  +G+  +++ FMQG
Sbjct  2022711  PNTPVVTFNGEVRHLFNFMQG  2022773


 Score = 82.4 bits (202),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 43/50 (86%), Gaps = 0/50 (0%)
 Frame = +1

Query  110      FMQGNRPLVLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHA  159
                F   NRPL+LNFGSCT PSFM KFD+F +LI+DFSS ADFL+IYIEEAHA
Sbjct  2024464  FPPDNRPLILNFGSCT*PSFMLKFDEFNKLIKDFSSXADFLIIYIEEAHA  2024613


 Score = 35.8 bits (81),  Expect = 0.80, Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (66%), Gaps = 7/38 (18%)
 Frame = +2

Query  210      AALPERLYIIQEGRILYKGKSGPWNYNPEEVRAVLEKL  247
                + LP  L+ +Q       G  GPW+Y+P+E+RA+LEK+
Sbjct  2026475  STLPYNLFPLQ-------GGVGPWDYHPQEIRAILEKM  2026567


>PTFA01000036.1 Casuarius casuarius isolate B32419 scaffold_35, whole genome 
shotgun sequence
Length=6593893

 Score = 33.1 bits (74),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = -1

Query  98       VRLSGQRCNIWEFMQGNRPLVLNFGSCTUP  127
                VRL G+RC    FMQ   PLVL F S ++P
Sbjct  3276727  VRLHGERC----FMQCTYPLVLGFHSSSCP  3276650


>PTFA01000055.1 Casuarius casuarius isolate B32419 scaffold_54, whole genome 
shotgun sequence
Length=5338051

 Score = 32.7 bits (73),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 33/65 (51%), Gaps = 4/65 (6%)
 Frame = -3

Query  37       VKRNILAMGEKTGMTRNPHFSHDNWIPTF---FSTQYFWFVLKVRWQRLEDTTELGGLAP  93
                 +R ++ +     + R+ H S  N+ P+F   F++Q+  F+L     RLE   E GG   
Sbjct  4501097  CRRKLMQLDSC*DLLRDQHQSSHNFSPSFTFYFTSQF*HFLL-YSAMRLEGGNEAGGANR  4500921

Query  94       NCPVV  98
                +C VV
Sbjct  4500920  SCEVV  4500906



Lambda      K        H        a         alpha
   0.324    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 51131724127


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
