Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/eEFsec.x.fa -t eEFsec.extraction.KV884777.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: eEFsec # Protein # Eukaryotic elongation factor (eEFsec) # Zebrafish Target: KV884777.1:subseq(194184,100000) Monopterus albus unplaced genomic scaffold scaffold89.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 2233 Query range: 5 -> 576 Target range: 45613 -> 55367 6 : LysThrLeuAsnPheAsnValGlyValLeuGlyHisValAspSerGlyLysThrSerLeu : 25 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LysThrLeuAsnPheAsnValGlyValLeuGlyHisValAspSerGlyLysThrSerLeu 45614 : AAGACGTTAAATTTCAACGTCGGGGTGCTCGGACATGTCGACAGCGGGAAGACATCGCTG : 45671 26 : AlaArgAlaLeuSerSerThrAlaSerThrAlaAlaPheAspLysAsnProGlnSerLys : 45 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||::: AlaArgAlaLeuSerSerThrAlaSerThrAlaAlaPheAspLysAsnProGlnSerArg 45672 : GCTAGGGCGCTGAGCAGCACCGCCTCCACGGCTGCCTTCGACAAGAACCCGCAGTCTCGT : 45731 46 : GluArgGlyIleThrLeuAspLeuGlyPheSerAlaPheThrValProLeuProGluHis : 65 |||||||||||||||||||||||||||||||||:!!|||.!!||| !||||||!!:||| GluArgGlyIleThrLeuAspLeuGlyPheSerSerPheAlaValAspLeuProAspHis 45732 : GAGAGGGGCATCACGTTGGACCTCGGCTTTTCCTCCTTCGCTGTGGATCTTCCTGATCAC : 45791 66 : LeuArgGluSerCysGlyGluLysGlnTyrAspSerLeuGlnPheThrLeuValAspCys : 85 |||!:!! ||| ! ||| !:!!|||||||||||||||||||||||||||||||||||| LeuGlnGlySerGlyGlyProGlnGlnTyrAspSerLeuGlnPheThrLeuValAspCys 45792 : CTACAGGGCAGCGGAGGACCGCAGCAGTATGACAGCCTGCAATTCACCCTGGTGGACTGT : 45851 86 : ProGlyHisAlaSerLeuIleArgThrIleIleGly{G} >>>> Target Intron : 98 ||||||||||||||||||||||||||||||||||||{|} 1357 bp ProGlyHisAlaSerLeuIleArgThrIleIleGly{G}++ 45852 : CCAGGACACGCCTCTCTGATTCGGACTATCATTGGG{G}gt................... : 45893 99 : 1 >>>> {ly}AlaGlnIleIleAspLeuMetMetLeuValValAspValValLysGly : 114 {||}|||||||||||||||||||||||||||||||||||||||||||||||| ++{ly}AlaGlnIleIleAspLeuMetMetLeuValValAspValValLysGly 45894 : ......ag{GT}GCCCAAATCATTGATCTGATGATGTTGGTGGTGGATGTGGTGAAAGGT : 47295 115 : MetGlnThrGlnThrAlaGluCysLeuLeuIleGlyGlnLeuThrCysSerArgMetVal : 134 :!:|||||||||||||||||||||||||||||||||:!!||||||||| !!||||||||| ValGlnThrGlnThrAlaGluCysLeuLeuIleGlyGluLeuThrCysProArgMetVal 47296 : GTCCAGACTCAGACTGCCGAGTGTCTGCTCATAGGAGAGCTGACTTGCCCTCGTATGGTG : 47355 135 : ValIleLeuAsnLysThrAspLeuLeuProSerAspLysArgGlnValAlaIleAspLys : 154 |||:!!|||||||||! !|||||||||||||||:!!||||||||| !||||||!!:||| ValValLeuAsnLysIleAspLeuLeuProSerAsnLysArgGlnSerAlaIleGluLys 47356 : GTCGTCCTGAACAAAATCGATTTGCTGCCATCCAACAAGAGACAGAGTGCCATTGAGAAG : 47415 155 : MetThrLysArgMetHisLysThrLeuGluAsnThr{Ar} >>>> Target Intron : 167 ||||||||||||:!!|||||||||||||||!.!|||{||} 251 bp MetThrLysArgLeuHisLysThrLeuGluThrThr{Ar}++ 47416 : ATGACCAAGAGACTGCACAAAACTCTAGAGACCACC{AG}gt.................. : 47458 168 : 2 >>>> {g}PheLysAspCysProIleIleAlaValAlaAlaLysProGlyGlyPro : 183 {|}||||||!!:||||||:!:|||||||||||||||||||||||||||||| ++{g}PheLysGluCysProValIleAlaValAlaAlaLysProGlyGlyPro 47459 : .......ag{A}TTTAAGGAATGCCCAGTGATTGCTGTGGCAGCAAAGCCTGGAGGCCCG : 47753 184 : GluAlaProAspThrAspGluProGlnGlyIleThrGluLeuIleAsp >>>> Targe : 200 |||||||||||||||!!:||||||||||||:!! !!|||||||||!!: GluAlaProAspThrGluGluProGlnGlyValProGluLeuIleGlu++ 47754 : GAAGCTCCTGACACAGAAGAGCCGCAGGGAGTCCCAGAGCTGATTGAGgt.......... : 47806 201 : t Intron 3 >>>> LeuLeuLysAlaGlnSerPheLeuProHisArgAspProSerG : 214 852 bp ||||||||| !|||!!!!:!||||||!!.|||||||||.!!| ++LeuLeuLysLysGlnThrTyrLeuProGlnArgAspProGlyG 47807 : ...............agCTTTTGAAGAAACAGACATACCTCCCTCAGAGAGACCCTGGTG : 48698 215 : lySerLeuLeuMetAlaValAspHisCysPheSerIleArgGlyGlnGlyThrValIleT : 234 ||..!|||||||||||||||||||||||||||||||||||||||||||||||||||!!:| lyAspLeuLeuMetAlaValAspHisCysPheSerIleArgGlyGlnGlyThrValMetT 48699 : GTGATCTTCTGATGGCTGTGGACCACTGCTTCTCCATCCGTGGTCAGGGAACAGTCATGA : 48758 235 : hrGlyThrIleLeuGlnGlySerLeuSerValAsnAspAsnValGluIleProAlaLeuL : 254 ||||||||:!!|||||||||||||||:!!:!!||||||!.!||||||||||||||||||| hrGlyThrValLeuGlnGlySerLeuAlaIleAsnAspThrValGluIleProAlaLeuL 48759 : CTGGGACCGTCCTGCAGGGGTCGCTGGCCATCAATGACACTGTGGAAATCCCAGCGCTGA : 48818 255 : ys >>>> Target Intron 4 >>>> ValThrArgLysValLysSerValGlnMe : 264 || 1182 bp ||||||!:!|||:!!|||||||||||||| ys++ ++ValThrLysLysIleLysSerValGlnMe 48819 : AGgt.........................agGTGACCAAGAAGATAAAGTCGGTGCAGAT : 50030 265 : tPheArgLysProValAlaSerAlaMetGlnGlyAspArgValGlyValCysValThrGl : 284 ||||||||||||||||:!!.!!|||||||||||||||||||||||||||||||||||||| tPheArgLysProValSerGlyAlaMetGlnGlyAspArgValGlyValCysValThrGl 50031 : GTTTCGGAAGCCAGTGTCAGGAGCCATGCAGGGGGATCGTGTGGGCGTGTGTGTGACACA : 50090 285 : nPheAspProLysLeuLeuGluArgGlyValValCysThrProGlySerLeuGlnThrLe : 304 ||||||||||||||||||||||||||||:!!|||||||||||||||||||||!!.||||| nPheAspProLysLeuLeuGluArgGlyLeuValCysThrProGlySerLeuHisThrLe 50091 : GTTTGACCCCAAACTGTTAGAGCGGGGTTTGGTGTGCACGCCAGGCTCCCTGCACACCCT : 50150 305 : uTyrAlaAlaIleIleSerValGlnLysIleGluTyrTyrArgGlyAlaLeuAsnSerAr : 324 ||||||||||:!!|||||||||::!||||||! |||!:!!:!|||:!!||| !!!!|| uTyrAlaAlaValIleSerValArgLysIleGlyTyrPheLysGlySerLeuAlaThrAr 50151 : CTATGCAGCTGTCATCTCTGTCAGGAAGATAGGCTACTTTAAGGGTTCCCTTGCCACCCG : 50210 325 : gAlaLysPheHisIleThrValGlyHisGluThrValMetAlaArgIleSerPhePheAs : 344 ||||||||||||||||||||||||||||||||||||||||||||||:!:!!!||||||.. gAlaLysPheHisIleThrValGlyHisGluThrValMetAlaArgValThrPhePheGl 50211 : TGCCAAATTCCACATCACTGTGGGACATGAAACAGTCATGGCGAGGGTGACCTTCTTTGG : 50270 345 : n<-><->ArgValLeuProAlaAsnGluAsnGlyAspSerLysProThrSerGlnGluGl : 362 ! ! !||| ! !!:!!.!. ... !|||!!!:!!||| ! !! !:!!! yLeuProProValGlyThrSerGluProArgPheAspThrGluProLeuProLeuGlnPr 50271 : CCTGCCACCTGTGGGTACCTCAGAGCCCCGGTTTGACACTGAACCACTACCATTGCAGCC : 50330 363 : nSerAla<-><->AsnSerPheSerPheAspTrpGluPheHisHisLeuAspGluHisLe : 380 !!!:!! !.. !!|||!!!|||||| !!|||!:! !:!!! !||||||:!!:! oCysSerLeuAspThrProPheThrPheAspArgGluTyrPheTyrGlnAspGluTyrVa 50331 : CTGCTCCCTGGATACACCCTTCACCTTCGACAGGGAGTACTTCTACCAGGATGAATACGT : 50390 381 : uThrSerGlnAlaGluGlyGlyLysGlyGluProGlnGlnTrpAlaLeuLeuGluPheGl : 400 !|||||||||!.!||| !.!!:!..!.!.|||:!!||||||||||||||||||||||| lThrSerGlnGlyGlu---AlaArgSerAsnProLysGlnTrpAlaLeuLeuGluPheGl 50391 : TACCAGTCAGGGAGAG---GCCAGGTCTAATCCAAAGCAATGGGCCTTGTTGGAGTTTGA : 50447 401 : uArgProValThrCysProProLeuCysLeuValIleGlySerArgLeuAspSerAspIl : 420 ||||||||||||||||||| !|||||||||||||||||||||!:!||||||!!!||||| uArgProValThrCysProLeuLeuCysLeuValIleGlySerLysLeuAspThrAspIl 50448 : GCGGCCAGTCACATGTCCCTTACTCTGCCTTGTGATTGGCTCCAAGCTGGACACAGACAT : 50507 421 : eHisGlyAsnThrCysArgLeuAlaPheHisGlyLysLeuLeuGluGlyPheGluAspLy : 440 ||||!.!|||.!!|||||||||||||||!!.|||:::||||||:!!|||||||||||||| eHisAlaAsnAlaCysArgLeuAlaPheGlnGlyArgLeuLeuGlnGlyPheGluAspLy 50508 : CCATGCTAATGCATGTCGGTTAGCCTTCCAAGGCCGTCTGTTACAGGGGTTTGAAGATAA : 50567 441 : sAsnTyrThrGluThrAlaLeuProArgLeuLysIleSerLysAspLysGlnLysGluGl : 460 |!:!|||.!!|||||||||||||||||||||:::||| |||...|||||||||||||| sSerTyrAlaGluThrAlaLeuProArgLeuArgIleTyrLysSerLysGlnLysGluGl 50568 : AAGCTATGCTGAGACTGCCCTGCCTCGTCTGCGCATctacaaaagcaaacaaaaggaGGG : 50627 461 : yAlaValGluArg >>>> Target Intron 5 >>>> >>>> Target Intr : 465 | ||||||||| 1156 bp 376 bp yGlnValGluArg++ ++++ 50628 : acaggtggagagggt.........................aggt................ : 51800 466 : on 6 >>>> ValThrAspAspTyrThrValIleGlyArgAsnLeuPheLysLysGluT : 481 ||||||||||||||||||||||||||||||||||||||||||||||||| ++ValThrAspAspTyrThrValIleGlyArgAsnLeuPheLysLysGluT 51801 : .........agGTGACTGATGATTACACTGTGATTGGCCGCAACCTGTTTAAGAAGGAGA : 52222 482 : hrAsnLeuGlnLeuPheValGlyLeuLysValThrLeuSerThrGlyGluAlaGlySerI : 501 ||||||||||||||||||||||||||||||||||||||||||||||||||::!||| !| hrAsnLeuGlnLeuPheValGlyLeuLysValThrLeuSerThrGlyGluSerGlyValI 52223 : CCAACCTGCAGCTGTTTGTGGGGTTAAAGGTCACACTGTCTACAGGAGAGAGTGGCGTCA : 52282 502 : leGluGlyGlyPheGlyGlnSerGlyLysIleLysIleArgIlePro{G} >>>> Tar : 517 |||||||||||||||||||||||||||||.!!|||||||||:!!! !{|} leGluGlyGlyPheGlyGlnSerGlyLysPheLysIleArgValGln{G}++ 52283 : TTGAGGGTGGGTTCGGACAGAGTGGGAAGTTCAAGATTCGTGTACAA{G}gt........ : 52333 518 : get Intron 7 >>>> {lu}GlyLeuLysGluGluThrLysGlnLeuLeuSerSerS : 530 2858 bp {||}|||||| ! !||||||||||||||||||!:!|||! ++{lu}GlyLeuHisProGluThrLysGlnLeuLeuAsnSerT 52334 : .................ag{AG}GGTCTTCATCCAGAAACCAAGCAGTTATTAAACTCCA : 55227 531 : erSerLysLysLysGlyLysGlyGlySerLysAsnGluSerProLysLeuGluGluAlaL : 550 !!||||||||||||||||||||||||||||||..! !! !!!!. !|||||| !!| hrSerLysLysLysGlyLysGlyGlySerLysGlyCysProAlaAsnGluGluGluProL 55228 : CCTCTAAGAAGAAAGGAAAGGGTGGAAGCAAAGGCTGCCCAGCAAATGAAGAGGAGCCCA : 55287 551 : ysProAspAlaGlnProValThrIleHisLeuAsnPheLysArgTyrIleTyrAspProH : 570 || !!|||:!!:!!||||||!:!|||||||||..!||||||||||||:!!!:!||||||| ysAlaAspSerGluProValSerIleHisLeuArgPheLysArgTyrValPheAspProH 55288 : AAGCAGATTCTGAGCCTGTTAGCATTCACTTGCGTTTCAAACGGTATGTCTTTGATCCCC : 55347 571 : isLysLysMetValGlnSer : 576 |||||||||||||||||||| isLysLysMetValGlnSer 55348 : ATAAAAAGATGGTTCAGTCT : 55367 vulgar: eEFsec 5 576 . KV884777.1:subseq(194184,100000) 45613 55367 + 2233 M 92 276 S 0 1 5 0 2 I 0 1353 3 0 2 S 1 2 M 68 204 S 0 2 5 0 2 I 0 247 3 0 2 S 1 1 M 32 96 5 0 2 I 0 848 3 0 2 M 55 165 5 0 2 I 0 1178 3 0 2 M 90 270 G 0 6 M 20 60 G 0 6 M 21 63 G 1 0 M 78 234 5 0 2 I 0 1152 3 0 2 5 0 2 I 0 372 3 0 2 M 52 156 S 0 1 5 0 2 I 0 2854 3 0 2 S 1 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884777.1:subseq(194184,100000) exonerate:protein2genome:local gene 45614 55367 2233 + . gene_id 1 ; sequence eEFsec ; gene_orientation + KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 45614 45890 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 45614 45890 . + . insertions 0 ; deletions 0 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 45891 45892 . + . intron_id 1 ; splice_site "GT" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 45891 47247 . + . intron_id 1 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 47246 47247 . + . intron_id 0 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 47248 47455 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 47248 47455 . + . insertions 0 ; deletions 0 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 47456 47457 . + . intron_id 2 ; splice_site "GT" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 47456 47706 . + . intron_id 2 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 47705 47706 . + . intron_id 1 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 47707 47803 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 47707 47803 . + . insertions 0 ; deletions 0 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 47804 47805 . + . intron_id 3 ; splice_site "GT" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 47804 48655 . + . intron_id 3 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 48654 48655 . + . intron_id 2 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 48656 48820 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 48656 48820 . + . insertions 0 ; deletions 0 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 48821 48822 . + . intron_id 4 ; splice_site "GT" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 48821 50002 . + . intron_id 4 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 50001 50002 . + . intron_id 3 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 50003 50641 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 50003 50641 . + . insertions 12 ; deletions 1 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 50642 50643 . + . intron_id 5 ; splice_site "gt" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 50642 51797 . + . intron_id 5 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 51796 51797 . + . intron_id 4 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 51798 51799 . + . intron_id 6 ; splice_site "GT" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 51798 52173 . + . intron_id 6 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 52172 52173 . + . intron_id 5 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 52174 52330 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 52174 52330 . + . insertions 0 ; deletions 0 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice5 52331 52332 . + . intron_id 7 ; splice_site "GT" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local intron 52331 55188 . + . intron_id 7 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local splice3 55187 55188 . + . intron_id 6 ; splice_site "AG" KV884777.1:subseq(194184,100000) exonerate:protein2genome:local cds 55189 55367 . + . KV884777.1:subseq(194184,100000) exonerate:protein2genome:local exon 55189 55367 . + . insertions 0 ; deletions 0 KV884777.1:subseq(194184,100000) exonerate:protein2genome:local similarity 45614 55367 2233 + . alignment_id 1 ; Query eEFsec ; Align 45614 6 276 ; Align 47250 99 204 ; Align 47708 168 96 ; Align 48656 200 165 ; Align 50003 255 270 ; Align 50279 345 60 ; Align 50345 365 63 ; Align 50408 387 234 ; Align 52174 465 156 ; Align 55191 518 177 # --- END OF GFF DUMP --- # -- completed exonerate analysis