Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/TXNRD3.x.fa -t TXNRD3.extraction.KV884706.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: TXNRD3 # Protein # Thioredoxin reductase 3 (TXNRD3) # Zebrafish Target: KV884706.1:subseq(9992967,100000) Monopterus albus unplaced genomic scaffold scaffold18.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2605 Query range: 0 -> 611 Target range: 54311 -> 39704 1 : MetProProIleGluAsnAspAlaGlyArgGluGlnIleArgSerLysIleLysGluLeu : 20 |||||||||||||||||||||||||||!:!.!.:!!:!!!:!|||::!|||:!!:!!||| MetProProIleGluAsnAspAlaGlyLysAsnGluLeuLysSerArgIleGlnGlnLeu 54311 : ATGCCTCCCATCGAAAATGACGCCGGGAAGAATGAACTCAAATCTCGGATACAGCAGCTT : 54254 21 : IleAspSerSerAlaValValValPheSerLysSerPheCysProPheCysValLys > : 40 ||||||!!!!:! !|||||||||||||||||||||!:!||||||!:!|||:!!:!! IleAspThrAsnArgValValValPheSerLysSerTyrCysProTyrCysLeuGlu++ 54253 : ATTGACACCAATCGAGTGGTGGTTTTCAGCAAAAGCTACTGCCCGTATTGTCTGGAGgt. : 54192 41 : >>> Target Intron 1 >>>> ValLysAspLeuPheLysGluLeuAsnValLysT : 51 470 bp ||||||||||||||||||||||||!!.|||:!!! ++ValLysAspLeuPheLysGluLeuLysValGluC 54191 : ........................aggtcaaagacttGTTCAAAGAGCTAAAAGTCGAGT : 53691 52 : yrAsnThrIleGluLeuAspLeuMet{G} >>>> Target Intron 2 >>>> {l : 60 !|||..!:!:||||||||||||!!:{|} 2192 bp {| ysAsnValValGluLeuAspLeuIle{G}++ ++{l 53690 : GTAATGTGGTGGAGTTGGACCTCATA{G}gt.........................ag{A : 51471 61 : u}AspGlyThrAsnTyrGlnAspLeuLeuHisGluMetThrGlyGlnLysThrValProA : 80 |}||||||!:!|||||||||!!::!!|||! !|||||||||||||||||||||||||||| u}AspGlySerAsnTyrGlnGluMetLeuLeuGluMetThrGlyGlnLysThrValProA 51470 : G}GATGGAAGCAACTACCAGGAGATGCTGCTTGAGATGACTGGACAGAAAACTGTTCCTA : 51412 81 : snValPheIleAsnLysLysHisIleGlyGlyCysAspAsnThrMetLys >>>> Tar : 97 |||||||||||||||||! !|||:!!||||||||||||!..||||||:!! snValPheIleAsnLysThrHisValGlyGlyCysAspArgThrMetGln++ 51411 : ATGTCTTCATCAACAAGACGCATGTTGGTGGCTGTGACAGAACCATGCAGgt........ : 51359 98 : get Intron 3 >>>> AlaHisLysAspGlyValLeuGlnLysLeuLeuGlyGluGl : 110 925 bp ||||||!!.|||||| !||||||:!!||||||..!! !|| ++AlaHisAsnAspGlySerLeuGlnGlnLeuLeuAsnGlyGl 51358 : .................agGCTCATAATGACGGAAGCCTGCAGCAGCTACTGAATGGAGG : 50397 111 : ySerGluValTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGlyLeuAlaCy : 130 |!:!|||||||||||||||||||||||||||||||||||||||||||||||||||||||| yAsnGluValTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGlyLeuAlaCy 50396 : AAATGAAGTTTATGACTATGACCTGATTGTGATTGGAGGAGGATCTGGAGGCCTGGCCTG : 50337 131 : sSerLys >>>> Target Intron 4 >>>> AlaThrAlaThrLeuGlyLysLys : 140 ||||||| 165 bp ! !.!!||| !|||||||||||| sSerLys++ ++GluAlaAlaLeuLeuGlyLysLys 50336 : CTCAAAGgt.........................agGAAGCTGCTCTATTGGGGAAGAAG : 50142 141 : ValMetValLeuAspTyrValValProThrProGlnGlyThrAlaTrp{G} >>>> Ta : 157 |||||||||||||||||||||||||||||||||:!!||||||.!!|||{|} ValMetValLeuAspTyrValValProThrProLysGlyThrThrTrp{G}++ 50141 : GTTATGGTGCTGGACTATGTTGTGCCCACACCAAAAGGAACCACCTGG{G}gt....... : 50088 158 : rget Intron 5 >>>> {ly}LeuGlyGlyThrCysValAsnValGlyCysIlePro : 169 91 bp {||}|||||||||||||||||||||||||||||||||||| ++{ly}LeuGlyGlyThrCysValAsnValGlyCysIlePro 50087 : ..................ag{GT}CTCGGTGGGACTTGTGTGAATGTGGGCTGTATTCCC : 49964 170 : LysLysLeuMetHisGlnThrAlaLeuLeuGlyThrAlaMetGluAspAlaArgLysPhe : 189 ||||||||||||||||||||||||:!!|||.!!|||||||||:!!||||||||||||||| LysLysLeuMetHisGlnThrAlaMetLeuSerThrAlaMetGlnAspAlaArgLysPhe 49963 : AAGAAGCTAATGCACCAGACTGCCATGTTGAGCACTGCCATGCAGGATGCACGCAAGTTT : 49904 190 : GlyTrpGluPheAlaGluGln{V} >>>> Target Intron 6 >>>> {al}Thr : 198 |||||||||||| |||:::{|} 123 bp {||}! ! GlyTrpGluPheAspGluLys{V}++ ++{al}Lys 49903 : GGCTGGGAGTTtgatgagaaa{g}gt.........................ag{TG}AAA : 49754 199 : HisAsnTrpGluThrMetLysThrAlaValAsnAsnTyrIleGlySerLeuAsnTrpGly : 218 |||||||||!!:|||||||||||||||||||||||||||||||||||||||||||||||| HisAsnTrpAspThrMetLysThrAlaValAsnAsnTyrIleGlySerLeuAsnTrpGly 49753 : CACAACTGGGACACTATGAAGACGGCAGTGAACAACTACATTGGTTCATTGAACTGGGGC : 49694 219 : TyrArgValSerLeuArgAspLysAsnValAsnTyrValAsnAlaTyrAlaGluPheVal : 238 |||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||:!! TyrArgValAlaLeuArgAspLysAsnValAsnTyrValAsnAlaTyrAlaGluPheIle 49693 : TACCGGGTGGCGCTGAGAGACAAGAATGTCAACTATGTCAATGCCTATGCAGAGTTCATC : 49634 239 : GluProHisLysIleLysAlaSer >>>> Target Intron 7 >>>> AlaThrA : 249 ||||||||||||||||||!.!..! 469 bp |||.!!| GluProHisLysIleLysValGln-- ++AlaAlaA 49633 : GAACCACACAAAATCAAGGTACAGtg.........................agGCAGCAA : 49132 250 : snLysArgGlyLysGluThrPheTyrThrAlaAlaGlnPheValLeuAlaThrGlyGluA : 269 |||||||||||||||||||||||||||||||||||:!!|||:!!|||||||||||||||| snLysArgGlyLysGluThrPheTyrThrAlaAlaLysPheIleLeuAlaThrGlyGluA 49131 : ACAAACGAGGGAAGGAGACATTTTATACAGCAGCTAAATTTATCCTGGCTACAGGTGAGA : 49072 270 : rgProArgTyrLeuGlyIleProGlyAspLysGluPheCysIleThr{Se} >>>> Ta : 285 ||||||||||||||||||||||||||||||||||| !|||||||||{||} rgProArgTyrLeuGlyIleProGlyAspLysGluHisCysIleThr{Se}++ 49071 : GGCCACGCTACCTGGGCATCCCTGGAGACAAAGAGCATTGCATCACC{AG}gt....... : 49020 286 : rget Intron 8 >>>> {r}AspAspLeuPheSerLeuProTyrCysProGlyLysT : 298 1190 bp {|}||||||||||||||||||||||||||||||||||||| ++{r}AspAspLeuPheSerLeuProTyrCysProGlyLysT 49019 : ..................ag{T}GATGACCTCTTCTCATTGCCCTACTGCCCTGGAAAGA : 47795 299 : hrLeuValValGlyAlaSerTyrValAlaLeuGluCysGlyGlyPheLeuAlaGlyLeuG : 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| hrLeuValValGlyAlaSerTyrValAlaLeuGluCysGlyGlyPheLeuAlaGlyLeuG 47794 : CCCTGGTGGTCGGAGCATCGTATGTGGCTCTGGAGTGTGGCGGTTTCCTGGCTGGCTTGG : 47735 319 : lyLeuAspValThrIleMetValArgSerIleLeuLeuArgGlyPheAspGlnAspMetA : 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyLeuAspValThrIleMetValArgSerIleLeuLeuArgGlyPheAspGlnAspMetA 47734 : GTCTTGATGTCACCATCATGGTTCGGTCCATCCTCCTGAGGGGCTTTGACCAGGACATGG : 47675 339 : laAspArgAlaGlyGluTyrMetGluThrHisGlyValLysPheLeuArgLysPheValP : 358 ||:!!|||||||||:!!:!!|||||| !||||||:!!||||||:!!||||||!:!|||| laAsnArgAlaGlyLysHisMetGluGluHisGlyIleLysPheIleArgLysTyrValP 47674 : CCAACCGTGCTGGTAAGCACATGGAGGAGCATGGCATCAAGTTCATCCGCAAATATGTCC : 47615 359 : roThrLys >>>> Target Intron 9 >>>> ValGlyCysIlePheProGlnIl : 368 ||! !||| 297 bp ..! ! !.!. !|||:! roIleLys++ -+ThrLeuLeuCysMetCysGlnVa 47614 : CTATCAAGgt.........................tgACTCTCCTGTGTATGTGTCAGGT : 47288 369 : eGluGlnLeuGluAlaGlyThrProGlyArgIleLysValThrAlaLysSerThrGluSe : 388 !|||:!!||||||||||||:!!|||||||||:!:||||||||||||||||||||||||!! lGluGluLeuGluAlaGlySerProGlyArgLeuLysValThrAlaLysSerThrGluTh 47287 : AGAGGAGCTGGAAGCAGGATCTCCTGGCAGGCTGAAGGTGACAGCCAAGTCAACAGAGAC : 47228 389 : rGluGluValPheGluGlyGluTyrAsnThr >>>> Target Intron 10 >>>> : 399 !!!:!!::!!.!!|||||||||||||||||| 991 bp rAspAspIleIleGluGlyGluTyrAsnThr++ + 47227 : TGACGACATCATCGAGGGAGAGTATAACACGgt..........................a : 46206 400 : ValLeuIleAlaValGlyArgAspAlaCysThrGlyLysIleGlyLeuAspLysAlaGl : 418 |||||||||||||||||||||||||||||||||! !|||:!!||||||||||||||||| +ValLeuIleAlaValGlyArgAspAlaCysThrAspLysLeuGlyLeuAspLysAlaGl 46205 : gGTGTTAATAGCAGTGGGCCGAGATGCATGTACAGACAAGCTTGGCCTGGACAAGGCAGG : 46147 419 : yValLysIleAsnGlu{Ly} >>>> Target Intron 11 >>>> {s}AsnGlyL : 427 |:!!! !:!!||| {||} 2309 bp {|}||||||| yIleIleValAsnPro{Ly}++ ++{s}AsnGlyL 46146 : GATCATAGTCAACCCC{AA}gt..........................ag{G}AACGGAA : 43811 428 : ysValProValAsnAspGluGluGlnThrAsnValProHisIleTyrAlaIleGlyAspI : 447 ||:!!|||||||||||||||||||||||||||:!!||||||||||||||||||||||||| ysIleProValAsnAspGluGluGlnThrAsnIleProHisIleTyrAlaIleGlyAspI 43810 : AAATTCCAGTGAACGATGAAGAGCAGACCAACATTCCCCACATCTATGCCATTGGAGACA : 43751 448 : leLeuGluGlyLysTrpGluLeuThrProValAlaIleGlnAlaGlyLysLeuLeuAlaA : 467 |||||:!!! !||||||||||||||||||||||||||||||||||||||||||||||||| leLeuGlnAspLysTrpGluLeuThrProValAlaIleGlnAlaGlyLysLeuLeuAlaA 43750 : TTCTGCAAGACAAGTGGGAGCTGACACCTGTGGCCATCCAGGCTGGCAAGCTGCTGGCAC : 43691 468 : rgArgLeuTyrAlaGlyAlaThrMetLys >>>> Target Intron 12 >>>> C : 477 |||||||||||!.!|||:!!|||:!:||| 157 bp | rgArgLeuTyrGlyGlySerThrLeuLys++ ++C 43690 : GGCGCCTCTATGGGGGATCAACCCTTAAGgt..........................agT : 43504 478 : ysAspTyrValAsnValProThrThrValPheThrProMetGluTyrGlySerCysGlyH : 497 ||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||! ysAspTyrIleAsnValProThrThrValPheThrProMetGluTyrGlySerCysGlyL 43503 : GTGACTACATCAACGTTCCCACAACAGTTTTCACCCCAATGGAGTATGGCTCCTGTGGTC : 43444 498 : isProGluGluLysAlaIleGlnMetTyrGlyGlnGluAsnLeuGlu >>>> Target : 513 !!||||||!:!|||! !:!!:!:||||||||||||||||||||| 1 euSerGluGluArgAlaThrGluLeuTyrGlyGlnGluAsnLeuGlu++ 43443 : TGTCGGAGGAGAGGGCCACTGAGCTCTATGGACAGGAGAATTTAGAGgt........... : 43394 514 : Intron 13 >>>> ValTyrHisSerLeuPheTrpProLeuGluPheThrValProG : 527 382 bp ||||||||||||||||||||||||||||||||||||||||||| ++ValTyrHisSerLeuPheTrpProLeuGluPheThrValProG 43393 : ...............agGTGTACCACAGTCTGTTCTGGCCTCTGGAGTTCACTGTGCCCG : 41972 528 : lyArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnLysLeuAspAsn >>>> : 545 ||||||||||||||! !|||||||||||||||||||||||||||||||||||| lyArgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysLeuAspAsn++ 41971 : GCAGGGACAACAACACATGCTACGCAAAGATCATCTGCAATAAACTGGACAATgt..... : 41916 546 : Target Intron 14 >>>> LeuArgValIleGlyPheHisTyrLeuGlyProAsnA : 557 114 bp !|||||||||||||||||||||||||||||||||| ++AspArgValIleGlyPheHisTyrLeuGlyProAsnA 41915 : .....................agGATCGAGTCATCGGGTTCCACTACCTGGGACCAAATG : 41768 558 : laGlyGluValThrGlnGlyPheGlyAlaAlaMetLysCysGlyIleThrLysAspGlnL : 577 ||||||||||||||||||||||||||||||||||||||||| !!:!!||||||!!:|||| laGlyGluValThrGlnGlyPheGlyAlaAlaMetLysCysArgValThrLysGluGlnL 41767 : CAGGAGAGGTGACGCAGGGCTTCGGTGCCGCCATGAAATGCAGAGTCACCAAGGAGCAGC : 41708 578 : euAspAsnThrIleGlyIleHisProThrCysAlaGlu >>>> Target Intron 1 : 590 |||||..!|||||||||||||||||||||||||||||| 1899 bp euAspGlyThrIleGlyIleHisProThrCysAlaGlu++ 41707 : TGGACGGCACCATCGGCATCCACCCAACCTGTGCTGAGgt.................... : 41667 591 : 5 >>>> IlePheThrThrMetGluValThrLysSerSerGlyGlyAspIleThrGlnS : 607 ||||||||||||:!!|||||||||||||||||||||||||||:!!||||||: ++IlePheThrThrLeuGluValThrLysSerSerGlyGlyAspValThrGlnA 41666 : ......agATCTTTACCACTTTGGAGGTGACCAAGAGCTCCGGCGGAGACGTCACCCAGG : 39719 608 : erGlyCysUnkGly : 611 !!|||||| ||| laGlyCys***Gly 39718 : CCGGCTGCTGAGGT : 39705 vulgar: TXNRD3 0 611 . KV884706.1:subseq(9992967,100000) 54311 39704 - 2605 M 39 117 5 0 2 I 0 466 3 0 2 M 20 60 S 0 1 5 0 2 I 0 2188 3 0 2 S 1 2 M 36 108 5 0 2 I 0 921 3 0 2 M 36 108 5 0 2 I 0 161 3 0 2 M 24 72 S 0 1 5 0 2 I 0 87 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 119 3 0 2 S 1 2 M 49 147 5 0 2 I 0 465 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1186 3 0 2 S 1 1 M 75 225 5 0 2 I 0 293 3 0 2 M 38 114 5 0 2 I 0 987 3 0 2 M 25 75 S 0 2 5 0 2 I 0 2305 3 0 2 S 1 1 M 52 156 5 0 2 I 0 153 3 0 2 M 36 108 5 0 2 I 0 1378 3 0 2 M 32 96 5 0 2 I 0 110 3 0 2 M 45 135 5 0 2 I 0 1895 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local gene 39705 54311 2605 - . gene_id 1 ; sequence TXNRD3 ; gene_orientation + KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 54195 54311 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 54195 54311 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 54193 54194 . - . intron_id 1 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 53725 54194 . - . intron_id 1 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 53725 53726 . - . intron_id 0 ; splice_site "ag" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 53664 53724 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 53664 53724 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 53662 53663 . - . intron_id 2 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 51472 53663 . - . intron_id 2 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 51472 51473 . - . intron_id 1 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 51362 51471 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 51362 51471 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 51360 51361 . - . intron_id 3 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 50437 51361 . - . intron_id 3 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 50437 50438 . - . intron_id 2 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 50329 50436 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 50329 50436 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 50327 50328 . - . intron_id 4 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 50164 50328 . - . intron_id 4 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 50164 50165 . - . intron_id 3 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 50091 50163 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 50091 50163 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 50089 50090 . - . intron_id 5 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 50000 50090 . - . intron_id 5 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 50000 50001 . - . intron_id 4 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 49880 49999 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 49880 49999 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 49878 49879 . - . intron_id 6 ; splice_site "gt" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 49757 49879 . - . intron_id 6 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 49757 49758 . - . intron_id 5 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 49608 49756 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 49608 49756 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 49606 49607 . - . intron_id 7 ; splice_site "TG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 49139 49607 . - . intron_id 7 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 49139 49140 . - . intron_id 6 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 49023 49138 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 49023 49138 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 49021 49022 . - . intron_id 8 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 47833 49022 . - . intron_id 8 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 47833 47834 . - . intron_id 7 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 47607 47832 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 47607 47832 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 47605 47606 . - . intron_id 9 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 47310 47606 . - . intron_id 9 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 47310 47311 . - . intron_id 8 ; splice_site "TG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 47196 47309 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 47196 47309 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 47194 47195 . - . intron_id 10 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 46205 47195 . - . intron_id 10 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 46205 46206 . - . intron_id 9 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 46128 46204 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 46128 46204 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 46126 46127 . - . intron_id 11 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 43819 46127 . - . intron_id 11 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 43819 43820 . - . intron_id 10 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 43662 43818 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 43662 43818 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 43660 43661 . - . intron_id 12 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 43505 43661 . - . intron_id 12 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 43505 43506 . - . intron_id 11 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 43397 43504 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 43397 43504 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 43395 43396 . - . intron_id 13 ; splice_site "gt" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 42015 43396 . - . intron_id 13 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 42015 42016 . - . intron_id 12 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 41919 42014 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 41919 42014 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 41917 41918 . - . intron_id 14 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 41805 41918 . - . intron_id 14 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 41805 41806 . - . intron_id 13 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 41670 41804 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 41670 41804 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice5 41668 41669 . - . intron_id 15 ; splice_site "GT" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local intron 39771 41669 . - . intron_id 15 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local splice3 39771 39772 . - . intron_id 14 ; splice_site "AG" KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local cds 39705 39770 . - . KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local exon 39705 39770 . - . insertions 0 ; deletions 0 KV884706.1:subseq(9992967,100000) exonerate:protein2genome:local similarity 39705 54311 2605 - . alignment_id 1 ; Query TXNRD3 ; Align 54312 1 117 ; Align 53725 40 60 ; Align 51470 61 108 ; Align 50437 97 108 ; Align 50164 133 72 ; Align 49998 158 117 ; Align 49755 198 147 ; Align 49139 247 114 ; Align 47832 286 225 ; Align 47310 361 114 ; Align 46205 399 75 ; Align 43818 425 156 ; Align 43505 477 108 ; Align 42015 513 96 ; Align 41805 545 135 ; Align 39771 590 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis