_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-21
 Query name: gi|1042301059|ref|XP_017346835.1| PREDICTED: 15 kDa selenoprotein [Ictalurus punctatus]
 Query range: 1-153  (total 153)

 Target: /data/www-rg/seblastian_results/652391315/tempfiles/temptarget.fasta
 Chromosome: KV884860.1:subseq_2942292,100000_ Strand: +
 Positions:
 -Exon 1  45605        45652
 -Exon 2  46872        47039
 -Exon 3  49229        49292
 -Exon 4  49777        49826
 -Exon 5  50009        50137

 Redox box: no

Query   MAAEVYLLWLLPLLQS <---Intron---> LAAFGAELSSEACRELGFSSNLLCSSCDLLGQFSLSPIEPFCRQCCQEEAQLESRK <---Intron-
        |/ |||||||| |||| <   1219bp   > |||/| |||||||||||||||||||||||||/|||/ //| ||||||/|||/|/|| <   2189bp 
Target  MSGEVYLLWLLSLLQS                LAAYGGELSSEACRELGFSSNLLCSSCDLLGEFSLTKLQPNCRQCCQQEAQMEARK            
        atgggtcctcctctct                cggtgggcttggtagcgttaacctattgccggtacaacccatccttccggcaggca            
        tcgatattgttcttac                tccaggatccacggatgtcgattggcgattgatgtcatacaggaggaaacatacga            
        ggaggccagctatagg                ggatttgggaggcgggcccccggccctcgcggccccgcgcccggccgggcggaacg            
                                                                                                            

Query   --> LYPGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFKGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILK
          > || ||||||||||||||||||| <   484bp    > |||||||||/|||||| <   182bp    > ||||||||||||||||||||||||||
Target      LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKMYKGLQIK                YVRGSDPVLKLLDDNGNIAEELSILK
            ctgggacggtgtacgatccgcg                tgaagacaatagccaa                tgagtgcgcactggagaagggcaaca
            tacgcttatgggatggtcata                cttggaacataagtata                atggcacttattaaagatcaatgtta
            cttacccgataaagggctaca                ttcgtcggggcgttgcg                cgacattaagtgttcgcctagccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLDRI
        |||||||||||||||||
Target  WNTDSVEEFLSEKLDRI
        taagagggtcagatgca
        gacagtaattgaatagt
        gcactgggcgtgaacaa
                         
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 878 ; UGA-SECIS: 1085

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884860.1:subseq_2942292,100000_ Strand = + Positions = 51016 - 51091
 Found by:  Infernal (score=32.44) Covels (score=25.08)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.44

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((((((......{[[(({((((((([(.....--........)])))))))}))]]}.....-..))))))))..
 target  CUGAGGCACACAUUCGUGAAGCCCUCACAGUAAACC--AGUAUUGGGAUGUGGGGUCUGAUGUACA-UUUGUGUUUUCU
                         ****           ^^^                       ****