Command line: [exonerate -m p2g --showtargetgff -q Sel15.x.fa -t Sel15.extraction.KV884860.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: Sel15 # Protein # 15 kDa selenoprotein (Sel15) # Zebrafish
        Target: KV884860.1:subseq(2942292,100000) Monopterus albus unplaced genomic scaffold scaffold172.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 603
   Query range: 0 -> 146
  Target range: 46844 -> 50137

     1 : LeuPheLeuLeuValPhePheAlaGlnLeuAlaSerTyrGlyAlaGluLeuSerSerGlu :    20
         |||.!.   |||:::         |||||||||:!!||||||!.!|||||||||||||||
         LeuLeuProLeuLeuSerSerLeuGlnLeuAlaAlaTyrGlyGlyGluLeuSerSerGlu
 46845 : CTTCTacctcttctttcctctctccagcTGGCGGCATATGGTGGTGAGCTGTCGTCAGAG : 46902

    21 : AlaCysArgGluLeuGlyPheSerSerAsnLeuLeuCysSerSerCysGluLeuLeuGly :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||!!:|||||||||
         AlaCysArgGluLeuGlyPheSerSerAsnLeuLeuCysSerSerCysAspLeuLeuGly
 46903 : GCGTGCAGGGAGCTGGGCTTCTCCAGCAACCTGCTGTGCAGCTCCTGTGACCTGCTCGGG : 46962

    41 : GlnPheSerLeuAsnGlnLeuAspLeuProCysArgGlnCysCysGlnGluGluAlaGln :    60
         :!!|||||||||!.!:!!|||.!.! !  !||||||||||||||||||:!!|||||||||
         GluPheSerLeuThrLysLeuGlnProAsnCysArgGlnCysCysGlnGlnGluAlaGln
 46963 : GAGTTCAGCCTCACCAAGCTCCAGCCCAACTGCCGGCAGTGCTGCCAGCAGGAGGCCCAG : 47022

    61 : LeuGluAsnArgLys  >>>> Target Intron 1 >>>>  LeuTyrProGlyAlaI :    71
         :!!|||   ||||||           2189 bp           |||||| !!|||||||
         MetGluAlaArgLys++                         ++LeuTyrAlaGlyAlaI
 47023 : ATGGAAGCACGCAAGgt.........................agCTCTATGCTGGAGCCA : 49244

    72 : leLeuGluValCysGlyUnkLysLeuGlyArgPheProGlnValGln{A}  >>>> Tar :    87
         |||||||||||||||||   |||||||||||||||||||||||||||{|}          
         leLeuGluValCysGly***LysLeuGlyArgPheProGlnValGln{A}++        
 49245 : TCCTCGAGGTATGTGGATGAAAACTGGGGAGGTTCCCTCAAGTCCAA{G}gt........ : 49295

    88 : get Intron 2 >>>>  {la}PheValArgSerAspLysProLysLeuPheArgGlyL :   100
           484 bp           {||}||||||||||||||||||||||||:!!!:!!:!||||
                          ++{la}PheValArgSerAspLysProLysMetTyrLysGlyL
 49296 : .................ag{CT}TTTGTCAGGAGTGACAAGCCGAAGATGTACAAGGGTC : 49815

   101 : euGlnIleLys  >>>> Target Intron 3 >>>>  TyrValArgGlySerAspPr :   110
         |||||||||||            182 bp           ||||||||||||||||||||
         euGlnIleLys++                         ++TyrValArgGlySerAspPr
 49816 : TTCAGATCAAGgt.........................agTACGTGAGAGGCTCAGATCC : 50027

   111 : oValLeuLysLeuLeuAspAspAsnGlyAsnIleAlaGluGluLeuSerIleLeuLysTr :   130
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         oValLeuLysLeuLeuAspAspAsnGlyAsnIleAlaGluGluLeuSerIleLeuLysTr
 50028 : TGTACTAAAGCTTTTGGATGATAACGGGAACATCGCTGAAGAGCTCAGCATCCTCAAGTG : 50087

   131 : pAsnThrAspSerValGluGluPheLeuSerGluLysLeuGluArgIle :   146
         ||||||||||||||||||||||||||||||||||||||||!!:||||||
         pAsnThrAspSerValGluGluPheLeuSerGluLysLeuAspArgIle
 50088 : GAACACAGACAGTGTGGAGGAGTTCCTGAGTGAGAAATTAGACCGAATA : 50137

vulgar: Sel15 0 146 . KV884860.1:subseq(2942292,100000) 46844 50137 + 603 M 65 195 5 0 2 I 0 2185 3 0 2 M 21 63 S 0 1 5 0 2 I 0 480 3 0 2 S 1 2 M 16 48 5 0 2 I 0 178 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	gene	46845	50137	603	+	.	gene_id 1 ; sequence Sel15 ; gene_orientation +
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	cds	46845	47039	.	+	.	
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	exon	46845	47039	.	+	.	insertions 0 ; deletions 0
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	splice5	47040	47041	.	+	.	intron_id 1 ; splice_site "GT"
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	intron	47040	49228	.	+	.	intron_id 1
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	splice3	49227	49228	.	+	.	intron_id 0 ; splice_site "AG"
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	cds	49229	49292	.	+	.	
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	exon	49229	49292	.	+	.	insertions 0 ; deletions 0
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	splice5	49293	49294	.	+	.	intron_id 2 ; splice_site "GT"
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	intron	49293	49776	.	+	.	intron_id 2
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	splice3	49775	49776	.	+	.	intron_id 1 ; splice_site "AG"
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	cds	49777	49826	.	+	.	
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	exon	49777	49826	.	+	.	insertions 0 ; deletions 0
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	splice5	49827	49828	.	+	.	intron_id 3 ; splice_site "GT"
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	intron	49827	50008	.	+	.	intron_id 3
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	splice3	50007	50008	.	+	.	intron_id 2 ; splice_site "AG"
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	cds	50009	50137	.	+	.	
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	exon	50009	50137	.	+	.	insertions 0 ; deletions 0
KV884860.1:subseq(2942292,100000)	exonerate:protein2genome:local	similarity	46845	50137	603	+	.	alignment_id 1 ; Query Sel15 ; Align 46845 1 195 ; Align 49229 66 63 ; Align 49779 88 48 ; Align 50009 104 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis