_______________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-33
 Query name: gi|1035237468|ref|XP_008316560.2| PREDICTED: selenide, water dikinase 1-like [Cynoglossus semilaevis]
 Query range: 1-432  (total 432)

 Target: /data/www-rg/seblastian_results/498839210/tempfiles/temptarget.fasta
 Chromosome: KV884875.1:subseq_624694,100000_ Strand: +
 Positions:
 -Exon 1  45523        45799
 -Exon 2  46796        46899
 -Exon 3  47506        47613
 -Exon 4  47827        47981
 -Exon 5  48580        48670
 -Exon 6  49696        49795
 -Exon 7  50001        50213
 -Exon 8  51005        51243

 Redox box: no

Query   MSGSTSPPPLAEAGQTESCFPPGYKPFKPEEHGLERGFRLTAYSDLKGUGCKVPQEALLKLLAGLETDRVDGTGKAGDQAADFGQQLSAPRLG <---In
        ||| |||||  |   /|/|||||||||||||||||||||||//||/|||||||||||||||||||/ |/ | ||||||| //| |||  |||| <   99
Target  MSGRTSPPPSVEVVGSEACFPPGYKPFKPEEHGLERGFRLTSFSDMKGUGCKVPQEALLKLLAGLQPDQADMTGKAGDQISEFHQQLPGPRLG       
        atgaatccctgggggtggttccgtactacggcgcgcgtccatttgaagtgtagccggccaccggcccgcggaagagggcatgtccctcgcccg       
        tcggcccccctattgcacgtccgaactacaaagtaggtgtcctcataggggatcaacttattcgtacaacatcgacgaatcataaatcgcgt        
        gacaccgtatggtgacagtcctacgtcacggccggcgctcactgcggaaccgcgggtgcacggagggcgccgaggcgcaaggccaggcactc        
                                                        *                                                   

Query   tron---> VGMDCCVIPLRHGGLSLVQTTDFFYPLVDDPYMM <---Intron---> GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK <---
        6bp    > ||||||||||||||||||||||||||||/||||| <   606bp    > |||||||||||||||||||||||||||||||/||/| <   
Target           VGMDCCVIPLRHGGLSLVQTTDFFYPLVEDPYMM                GRIACANVLSDLYAMGITECDNMLMLLSVSQRMNDK     
                 ggagttgaccacggctcgcaagtttccgggctaa                gaagtgagcagctgagaagtgaacaccagacaaaga     
                gtgtaggttctgaggtcttaccattacttaacatt                ggtcgcattgatactgtcagaatttttgtgagtaaa     
                taagcctgtcgacagcagcgcacccctgggtccgg                cgagcccccttcccgcccgtccgagggtccgggtcg     
                                                                                                            

Query   Intron---> DRERVMPLIIQGFRDAAEEGGTSVTGGQTVINPWIIVGGVASVVCKPNDFIM <---Intron---> PDGAVPGDVLVLTKPLGTQVA
        213bp    > ||||||||/|/|||||||||||||||||||||||||/||||||||/||/||| <   598bp    > |||||||||||||||||||||
Target             DRERVMPLMIRGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNEFIM                PDGAVPGDVLVLTKPLGTQVA
                   gcgcgaccaacgtcgggggggatgaggcagaactaaaggggtggtccagtaa                cggggcgggcgcaaccgacgg
                   agagttctttggtgaccaaggcctcggacttacgtttggtccttgacaattt                cagctcgattttcactgcatc
                   ctggggatgtactacaaggtggcggtcggtcccgccaaaaaacgcgccgcc                ggtttattccgcgtatggagct
                                                                                                            

Query   VNAHQWLDQ <---Intron---> SERWNKIKLVVTKEEVKEAYQEAMFSMATLNRTA <---Intron---> AGLMHKFQAHAATDVTGFGLLGHAN
        ||||||||| <   1025bp   >  ||||||||||||||||||||||||||||||||| <   205bp    > | |||||||||||||||||||||||
Target  VNAHQWLDQ                PERWNKIKLVVTKEEVKEAYQEAMFSMATLNRTA                AALMHKFQAHAATDVTGFGLLGHAN
        gagcctcgc                cgataaaacggaagggaggtcggattagacacag                ggcacatcgcggaggagtgttgcga
        tacaagtaa                caggaatatttcaaataacaaacttctcctagc                cccttaatacacccatcgtgttgaca
        attcggttg                taggcgcaatccagatagctgacgccgaggtca                ggcagcgcgcctaatgactggagccc
                                                                                                            

Query   NLAAQQQNEVAFVIHNLPIIAKMAAISKACGNIFNLVQGTSAETSG <---Intron---> GLLVCLPREQAARFCAEMKNHSSGPGGPGPAGGAWIIG
        ||| |||||||||||||||||||||||||||| |/|/|| |/|||| <   791bp    > ||||||||||||/||/|||/ ||| || | ||||||||
Target  NLATQQQNEVAFVIHNLPIIAKMAAISKACGNAFSLLQGRSSETSG                GLLVCLPREQAAKFCSEMKSQSSGVGGQGTAGGAWIIG
        acgacccagggtgacaccaagaaggaaagtgagtacccgattgatg                gccgttcagcggatttgaaacatggggcgaggggtaag
        atccaaaaatctttaatcttcatcctgacggactgttaggccacc                ggtttgtcgaaccatgcatagagcgtggagccggcgttg
        cgaagagtggctccccaacacggccctactacgccgtgcaaagtt                tggggtgcaagacgtccaggcgctctacgaagcaagata
                                                                                                            

Query   IVEKGDRRARIIDKPRIIEVPPRGSQAANQDSISSSPAPSPNLS
        ||||||| |||||||||||| |||||||||/   /|||||||||
Target  IVEKGDRHARIIDKPRIIEVAPRGSQAANQE---NSPAPSPNLS
        aggaggccgcaagaccaagggccgacggacg---aacgcacatt
        ttaagagacgttaacgttatccgggaccaaa---agcccgcatc
        cagacccctcctcgttttgtaaaatgagtgg---ccttccttga
                                                    
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 582 ; UGA-SECIS: 1722

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884875.1:subseq_624694,100000_ Strand = + Positions = 51826 - 51912
 Found by:  Infernal (score=21.44) Covels (score=21.93)
 Stem2 length = 9   Apical loop length = 21   Insertion in stem2 = 2, 0
 Free Energy = -9.65

         ..(((((((..........((((((((((((..(((...................)))))))))))))))...........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggc--ccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (((({({((..........{[[[(((((((-..((.....................))-)))))))]]]}.......-...))})}))))
 target  UUCCCACCCUUCCUUUGUAUGAAGCUCUGC-UUUUUAAACCCCAGCCGACGGGGGCGG-GCGGAGUGGAUGUUUGCC-UUUGGAUUGGGG
                            ****             ^^^                           ****