Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/SEPHS.x.fa -t SEPHS.extraction.KV884693.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SEPHS Protein # Selenophosphate synthetase (SEPHS) # Zebrafish Target: KV884693.1:subseq(788095,100000) Monopterus albus unplaced genomic scaffold scaffold5.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 1896 Query range: 0 -> 392 Target range: 48770 -> 51999 1 : MetSerValArgGluSerPheAsnProGluSerTyrGluLeuAspLysAsnPheArgLeu : 20 |||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||| MetAlaValArgGluSerPheAsnProGluSerTyrGluLeuAspLysAsnPheArgLeu 48771 : ATGGCCGTGAGGGAGTCTTTTAACCCTGAAAGCTATGAGCTGGACAAGAACTTTAGACTC : 48828 21 : ThrArgPheThrGluLeuLysGlyThrGlyCysLys >>>> Target Intron 1 > : 33 |||||||||.!!|||||||||||||||||||||||| 103 bp ThrArgPheAlaGluLeuLysGlyThrGlyCysLys++ 48829 : ACACGCTTTGCTGAGCTCAAGGGCACAGGCTGCAAGgt...................... : 48869 34 : >>> ValProGlnAspValLeuGlnLysLeuLeuGluSerLeuGlnGluAsnHisTyrG : 51 |||||||||||||||||||||||||||||||||!!!|||||||||||||||! !| ++ValProGlnAspValLeuGlnLysLeuLeuGluThrLeuGlnGluAsnHisCysG 48870 : ...agGTGCCCCAAGATGTGTTACAGAAGCTGCTAGAGACCCTACAAGAGAACCACTGCC : 49024 52 : lnGluAspGluGlnPheLeuGlyAlaValMetProArgLeu{G} >>>> Target In : 65 |||||||||||||||||||||||||||||||||||||||||{|} 431 lnGluAspGluGlnPheLeuGlyAlaValMetProArgLeu{G}++ 49025 : AAGAGGATGAACAGTTCCTGGGGGCAGTTATGCCTCGATTA{G}gt.............. : 49069 66 : tron 2 >>>> {ly}IleGlyMetAspThrCysValIleProLeuArgHisGlyGlyL : 80 bp {||}||||||||||||||||||||||||||||||||||||||||||| ++{ly}IleGlyMetAspThrCysValIleProLeuArgHisGlyGlyL 49070 : ...........ag{ga}ATAGGCATGGACACATGCGTGATCCCTCTTAGACATGGAGGCC : 49542 81 : euSerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTyrMetMet : 100 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euSerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTyrMetMet+ 49543 : TTTCTCTAGTTCAGACTACAGATTACATCTACCCCATTGTGGATGACCCCTACATGATGg : 49602 101 : >>>> Target Intron 3 >>>> GlyArgIleAlaCysAlaAsnValLeuSerAs : 110 178 bp |||||||||||||||||||||||||||||||| + ++GlyArgIleAlaCysAlaAsnValLeuSerAs 49603 : t.........................agGGGAGAATTGCTTGTGCTAATGTTCTCAGTGA : 49810 111 : pLeuTyrAlaMetGlyValThrGluCysAspAsnMetLeuMetLeuLeuGlyValSerAs : 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pLeuTyrAlaMetGlyValThrGluCysAspAsnMetLeuMetLeuLeuGlyValSerAs 49811 : CCTGTACGCCATGGGAGTGACGGAGTGCGACAACATGTTGATGCTCCTGGGAGTCAGCAA : 49870 131 : nLysLeuThrGluLys >>>> Target Intron 4 >>>> GluArgAspLysVal : 140 ||||:!!:!!|||||| 115 bp ||||||||||||||| nLysMetSerGluLys++ ++GluArgAspLysVal 49871 : CAAAATGTCAGAGAAGgt.........................agGAGAGAGACAAAGTC : 50015 141 : MetProLeuValIleGlnGlyPheLysAspAlaSerGluGluAlaGlyThrSerValThr : 160 |||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||| MetProLeuIleIleGlnGlyPheLysAspAlaSerGluGluAlaGlyThrSerValThr 50016 : ATGCCACTGATCATCCAGGGATTCAAGGATGCATCAGAGGAAGCAGGCACATCTGTAACA : 50075 161 : GlyGlyGlnThrValIleAsnProTrpIleValLeuGlyGlyValAlaThrThrValCys : 180 |||||||||||||||:!!|||||||||:!!|||:!!|||||||||||||||||||||||| GlyGlyGlnThrValLeuAsnProTrpValValMetGlyGlyValAlaThrThrValCys 50076 : GGAGGACAGACGGTGCTCAACCCTTGGGTAGTGATGGGAGGAGTTGCTACAACAGTCTGC : 50135 181 : GlnProAsnGluPheIle{Me} >>>> Target Intron 5 >>>> {t}ProAsp : 189 ||||||||||||||||||{||} 121 bp {|}|||||| GlnProAsnGluPheIle{Me}++ ++{t}ProAsp 50136 : CAGCCCAACGAATTTATC{AT}gt.........................ag{G}CCAGAC : 50283 190 : AsnAlaValProGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaVal : 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AsnAlaValProGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaVal 50284 : AATGCTGTGCCAGGGGACGTGTTGGTGTTGACCAAGCCACTTGGAACACAAGTGGCTGTA : 50343 210 : AlaValHisGlnTrpLeuAspIle >>>> Target Intron 6 >>>> ProGluL : 220 |||||||||||||||||||||||| 361 bp ||||||| AlaValHisGlnTrpLeuAspIle++ ++ProGluL 50344 : GCAGTACATCAGTGGCTAGATATTgt.........................agCCTGAGA : 50737 221 : ysTrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrGlnGluA : 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||!!.|||| ysTrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrHisGluA 50738 : AGTGGAACAAGATCAAACTGGTGGTAACCCAGGAAGATGTAGAGCTGGCCTACCATGAAG : 50797 241 : laMetLeuAsnMetAlaArgLeuAsnArgThr{A} >>>> Target Intron 7 >> : 251 |||||:!!||||||||||||||||||||||||{|} 512 bp laMetMetAsnMetAlaArgLeuAsnArgThr{A}++ 50798 : CCATGATGAACATGGCTCGGCTCAACAGGACA{G}gt....................... : 50833 252 : >> {la}AlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyP : 269 {||}|||||||||||||||||||||||||||||||||||||||||||||||||||| ++{la}AlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyP 50834 : ..ag{CG}GCTGGCCTCATGCACACCTTCAATGCCCACGCAGCCACCGACATCACAGGGT : 51396 270 : heGlyIleLeuGlyHisAlaGlnAsnLeuAlaArgGlnGlnArgThrGluValSerPheV : 289 |||||||||||||||||||||||!..||||||||||||||||||!:!||||||||||||| heGlyIleLeuGlyHisAlaGlnThrLeuAlaArgGlnGlnArgSerGluValSerPheV 51397 : TCGGCATCCTCGGCCATGCTCAGACATTGGCACGACAACAGCGAAGTGAGGTGTCATTTG : 51456 290 : alIleHisAsnLeuProValLeuAlaLysMetAlaAlaValSerLysAlaCysGlyAsnM : 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alIleHisAsnLeuProValLeuAlaLysMetAlaAlaValSerLysAlaCysGlyAsnM 51457 : TCATCCACAATCTCCCAGTGCTCGCCAAGATGGCTGCTGTGTCCAAGGCCTGTGGGAACA : 51516 310 : etPheGlyLeuMetHisGlyThrCysProGluThrSer{G} >>>> Target Intro : 322 ||||||||||||||||||||||||||||||||||||||{|} 232 bp etPheGlyLeuMetHisGlyThrCysProGluThrSer{G}++ 51517 : TGTTTGGTCTCATGCATGGCACCTGCCCTGAAacatca{g}gt................. : 51558 323 : n 8 >>>> {ly}GlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysA : 338 {||}|||||||||||||||||||||||||||||||||||||||||||||| ++{ly}GlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysA 51559 : ........ag{GA}GGCCTGCTCATCTGTCTTCCCCGGGAGCAGGCTGCCCGCTTCTGTG : 51835 339 : laGluIleLysSerProLysTyrGlyGluGlyHisGlnAlaTrpIleIleGlyIleValG : 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| laGluIleLysSerProLysTyrGlyGluGlyHisGlnAlaTrpIleIleGlyIleValG 51836 : CTGAAATCAAATCTCCAAAATATGGAGAGGGCCACCAAGCGTGGATCATCGGAATTGTAG : 51895 359 : luLysGlyAsnArgThrAlaArgIleIleAspLysProArgIleIleGluValAlaProG : 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luLysGlyAsnArgThrAlaArgIleIleAspLysProArgIleIleGluValAlaProG 51896 : AGAAAGGAAACCGCACTGCTCGTATCATTGACAAACCACGGATCATAGAAGTGGCACCGC : 51955 379 : lnValAlaThrGlnAsnValAsnThrThrProGlyAlaThrSer : 392 ||!.!|||||||||||||||||| !!|||||||||||||||||| lnAlaAlaThrGlnAsnValAsnProThrProGlyAlaThrSer 51956 : AAGCTGCCACACAGAATGTCAACCCGACTCCCGGTGCAACTTCT : 51999 vulgar: SEPHS 0 392 . KV884693.1:subseq(788095,100000) 48770 51999 + 1896 M 32 96 5 0 2 I 0 99 3 0 2 M 32 96 S 0 1 5 0 2 I 0 427 3 0 2 S 1 2 M 34 102 5 0 2 I 0 174 3 0 2 M 36 108 5 0 2 I 0 111 3 0 2 M 51 153 S 0 2 5 0 2 I 0 117 3 0 2 S 1 1 M 30 90 5 0 2 I 0 357 3 0 2 M 33 99 S 0 1 5 0 2 I 0 508 3 0 2 S 1 2 M 70 210 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-23 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884693.1:subseq(788095,100000) exonerate:protein2genome:local gene 48771 51999 1896 + . gene_id 1 ; sequence SEPHS ; gene_orientation + KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 48771 48866 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 48771 48866 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 48867 48868 . + . intron_id 1 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 48867 48969 . + . intron_id 1 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 48968 48969 . + . intron_id 0 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 48970 49066 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 48970 49066 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 49067 49068 . + . intron_id 2 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 49067 49497 . + . intron_id 2 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 49496 49497 . + . intron_id 1 ; splice_site "ag" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 49498 49601 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 49498 49601 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 49602 49603 . + . intron_id 3 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 49602 49779 . + . intron_id 3 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 49778 49779 . + . intron_id 2 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 49780 49887 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 49780 49887 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 49888 49889 . + . intron_id 4 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 49888 50002 . + . intron_id 4 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 50001 50002 . + . intron_id 3 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 50003 50157 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 50003 50157 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 50158 50159 . + . intron_id 5 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 50158 50278 . + . intron_id 5 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 50277 50278 . + . intron_id 4 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 50279 50369 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 50279 50369 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 50370 50371 . + . intron_id 6 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 50370 50730 . + . intron_id 6 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 50729 50730 . + . intron_id 5 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 50731 50830 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 50731 50830 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 50831 50832 . + . intron_id 7 ; splice_site "GT" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 50831 51342 . + . intron_id 7 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 51341 51342 . + . intron_id 6 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 51343 51555 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 51343 51555 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice5 51556 51557 . + . intron_id 8 ; splice_site "gt" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local intron 51556 51787 . + . intron_id 8 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local splice3 51786 51787 . + . intron_id 7 ; splice_site "AG" KV884693.1:subseq(788095,100000) exonerate:protein2genome:local cds 51788 51999 . + . KV884693.1:subseq(788095,100000) exonerate:protein2genome:local exon 51788 51999 . + . insertions 0 ; deletions 0 KV884693.1:subseq(788095,100000) exonerate:protein2genome:local similarity 48771 51999 1896 + . alignment_id 1 ; Query SEPHS ; Align 48771 1 96 ; Align 48970 33 96 ; Align 49500 66 102 ; Align 49780 100 108 ; Align 50003 136 153 ; Align 50280 188 90 ; Align 50731 218 99 ; Align 51345 252 210 ; Align 51790 323 210 # --- END OF GFF DUMP --- # -- completed exonerate analysis