Command line: [exonerate -m p2g --showtargetgff -q SELENOWa.x.fa -t SELENOWa.extraction.KV884758.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SELENOWa  Protein # Selenoprotein W (SELENOW) # Zebrafish
        Target: KV884758.1:subseq(1306993,100000) Monopterus albus unplaced genomic scaffold scaffold70.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 337
   Query range: 0 -> 95
  Target range: 49476 -> 50258

     1 : MetGlyValGlnIleLysValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    10
         |||||||||:!!|||||||||||||||{||}            229 bp           
         MetGlyValGluIleLysValGluTyr{Cy}++                         ++
 49477 : ATGGGAGTGGAAATTAAAGTTGAATAC{TG}gt.........................ag : 49733

    11 : {s}GlyGlyUnkGlyTyrGluProArgTyrGlnGluLeuLysArgValValThrAlaGlu :    29
         {|}||||||   ||||||||||||||||||!:!||||||   |||||||||! !! !|||
         {s}GlyGly***GlyTyrGluProArgTyrArgGluLeuAlaArgValValLysAspGlu
 49734 : {T}GGTGGATGAGGATACGAACCCCGCTATCGGGAGCTCGCCCGGGTTGTCAAGGATGAG : 49790

    30 : PheThrAspAlaAspValSerGlyPheValGlyArgGln{G}  >>>> Target Intr :    43
         ||| !!||||||||||||||||||||||||||||||::!{.}            168 bp
         PheProAspAlaAspValSerGlyPheValGlyArgArg{S}++                
 49791 : TTTCCCGATGCGGATGTGTCAGGCTTCGTGGGAAGAAGA{A}gt................ : 49835

    44 : on 2 >>>>  {ly}SerPheGluIleGluIleAsnGlyGlnLeuIlePheSerLysLeu :    58
                    {!!}||||||||||||! !|||||||||||||||:!!||||||||||||
                  ++{er}SerPheGluIleValIleAsnGlyGlnLeuValPheSerLysLeu
 49836 : .........ag{gC}AGCTTTGAGATTGTAATCAACGGGCAGCTGGTCTTCTCCAAGCTT : 50045

    59 : GluThrSerGlyPheProTyrGluAspAsp  >>>> Target Intron 3 >>>>  I :    69
         ||||||.!!|||||||||||||||!!:|||            100 bp           :
         GluThrGlyGlyPheProTyrGluGluAsp++                         ++V
 50046 : GAGACTGGTGGTTTCCCATATGAGGAGGACgt.........................agG : 50178

    70 : leMetGlyValIleGlnArgAlaTyrAspGlyGlnProValGluLysIleThrLysSerG :    89
         !!|||..!!.!|||:!!! !||| ! !!:|||:!!||||||  !|||||||||||||||!
         alMetAsnAlaIleLysMetAlaGlnGluGlyLysProValProLysIleThrLysSerA
 50179 : TTATGAATGCAATCAAAATGGCCCAAGAAGGAAAACCTGTGCCGAAGATCACCAAAAGCC : 50238

    90 : lnProProCysValIleLeu :    95
         :! !!||||||||||||:!!
         rgAlaProCysValIleMet
 50239 : GGGCACCATGCGTCATAATG : 50258

vulgar: SELENOWa 0 95 . KV884758.1:subseq(1306993,100000) 49476 50258 + 337 M 9 27 S 0 2 5 0 2 I 0 225 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 164 3 0 2 S 1 2 M 25 75 5 0 2 I 0 96 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	gene	49477	50258	337	+	.	gene_id 1 ; sequence SELENOWa ; gene_orientation +
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	cds	49477	49505	.	+	.	
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	exon	49477	49505	.	+	.	insertions 0 ; deletions 0
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	splice5	49506	49507	.	+	.	intron_id 1 ; splice_site "GT"
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	intron	49506	49734	.	+	.	intron_id 1
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	splice3	49733	49734	.	+	.	intron_id 0 ; splice_site "AG"
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	cds	49735	49832	.	+	.	
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	exon	49735	49832	.	+	.	insertions 0 ; deletions 0
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	splice5	49833	49834	.	+	.	intron_id 2 ; splice_site "GT"
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	intron	49833	50000	.	+	.	intron_id 2
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	splice3	49999	50000	.	+	.	intron_id 1 ; splice_site "ag"
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	cds	50001	50077	.	+	.	
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	exon	50001	50077	.	+	.	insertions 0 ; deletions 0
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	splice5	50078	50079	.	+	.	intron_id 3 ; splice_site "GT"
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	intron	50078	50177	.	+	.	intron_id 3
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	splice3	50176	50177	.	+	.	intron_id 2 ; splice_site "AG"
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	cds	50178	50258	.	+	.	
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	exon	50178	50258	.	+	.	insertions 0 ; deletions 0
KV884758.1:subseq(1306993,100000)	exonerate:protein2genome:local	similarity	49477	50258	337	+	.	alignment_id 1 ; Query SELENOWa ; Align 49477 1 27 ; Align 49736 11 96 ; Align 50003 44 75 ; Align 50178 69 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis