Command line: [exonerate -m p2g --showtargetgff -q SELENOU2.x.fa -t SELENOU2.extraction.KV884708.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOU2 Protein # Selenoprotein U2 (SELENOU2) # Zebrafish Target: KV884708.1:subseq(1584671,100000) Monopterus albus unplaced genomic scaffold scaffold20.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 678 Query range: 2 -> 222 Target range: 49037 -> 50611 3 : ValHisProIleThrArgGlnIleSerSerSerValGlnAspAsnLysGlnAlaSerHis : 22 ||| |||||||||!:!|||:!!!!!!!!..! !!:!!!:! ! ! !:!!||| ! ValSerProIleThrGlnGlnValThrThrGlnSerArgGluIleGlyThrSerSerVal 49038 : gTTTCACCGATAACTCAACAAGTAACAACACAAAGTCGGGAAATTGGGACATCTTCTGTC : 49095 23 : AsnIleCysLeuSerGluLeuLysAsnCysPheIlePheAspArgHisGlyAspLysLys : 42 :!!||| ! |||..!!!::!!:!!:!!|||!!.|||!:!||||||||||||! !... AspIleArgLeuGluAspValGluAspCysLeuIleTyrAspArgHisGlyValSerLeu 49096 : GATATTCGACTTGAAGACGTCGAAGACTGTTTAATTTACGACAGGCATGGCGTCTCTCTT : 49155 43 : SerPheSerSerLeuPheGluHisAsnLysAlaIleValIlePheValArg >>>> Ta : 60 !|||!.!!:!|||!:!:!! !!!..|||:!!:!!:!!|||||||||||| LeuPheLysAsnLeuTyrGlnAspArgLysSerValIleIlePheValArg++ 49156 : CTGTTCAAGAACTTATATCAAGACAGGAAATCGGTCATCATTTTCGTGCGGgt....... : 49211 61 : rget Intron 1 >>>> HisPheLeuCysTyrThrCysLysGluTyrValGluAspL : 73 283 bp :!!||||||||||||!:!|||||||||||||||!!:|||| ++AsnPheLeuCysTyrSerCysLysGluTyrValAspAspL 49212 : ..................agAATTTCTTGTGCTACAGCTGTAAGGAATATGTGGATGATC : 49531 74 : euGlyLysIleProGlnHisValLeuGln >>>> Target Intron 2 >>>> As : 83 ||.!!|||||||||!:!.!...!|||:!! 155 bp || euSerLysIleProArgGluThrLeuGlu++ ++As 49532 : TGAGTAAAATACCTCGAGAAACACTGGAGgt.........................agGA : 49716 84 : pSerAsnValArgLeuValValIleGlyGlnSerSerTyrSerHisIleGln >>>> T : 101 |:!!..!:!!||||||||||||||||||||||||:!!:!! !||||||:!! pAlaGlyIleArgLeuValValIleGlyGlnSerAlaHisHisHisIleGlu++ 49717 : TGCTGGTATTAGACTGGTTGTGATTGGTCAGTCCGCCCATCATCACATAGAGgt...... : 49772 102 : arget Intron 3 >>>> GlyPheCysSerLeuThrGlyPheProHisGluIleTyr : 113 278 bp !||||||||||||||||||!:!|||:!!||||||||| ++ProPheCysSerLeuThrGlyTyrProTyrGluIleTyr 49773 : ...................agCCATTCTGCTCACTGACAGGGTATCCTTATGAAATATAT : 50084 114 : ValAspProGluArgGlnIleTyrLysArgLeuGlyLeuArgArgGlyGluThrTyrMet : 133 ||||||||||||||| ||||||:!!!:!||||||::::::||| ||| ::!! ValAspProGluArgCysIleTyrGlnLysLeuGlyMetLysArgGluGluLysPheThr 50085 : GTGGACCCAGAGCGATGCATTTATCAGAAGCTTGgaatgaagagagaggagaaattCACA : 50144 134 : GluThr{P} >>>> Target Intron 4 >>>> {ro}SerValSerProHisVal : 142 !!::!!{ } 93 bp {!!}!:! !|||||||||||| AspSer{A}++ ++{la}AsnProSerProHisVal 50145 : GACTCT{G}gt.........................ag{CG}AACCCTAGTCCACATGTG : 50264 143 : LysSerSerMetLeuSerGlySerLeuLysSerValTrpArgAlaMetThrSerProVal : 162 ||||||.!!!!:!!!! !|||..!:!!||||||:!!|||||||||!!:|||||||||!.! LysSerGlyIlePheMetGlyGlnMetLysSerIleTrpArgAlaIleThrSerProAla 50265 : AAGTCTGGTATTTTTATGGGCCAAATGAAAAGTATATGGAGGGCCATAACTAGCCCTGCA : 50324 163 : PheAspPheGlnGlyAspProGlnGlnGlnGlyGlyAlaLeuIleValGlyPro{G} > : 181 ||||||||||||||||||! !!!.|||||||||||||||:!!|||!.!||||||{|} PheAspPheGlnGlyAspLeuHisGlnGlnGlyGlyAlaIleIleAlaGlyPro{G}++ 50325 : TTTGACTTTCAAGGTGACCTACATCAACAAGGTGGAGCCATCATTGCAGGACCA{G}gt. : 50384 182 : >>> Target Intron 5 >>>> {ly}ProAspValHisPheAlaHisPheAspMet : 191 102 bp {||} ...||||||||| |||||||||||| ++{ly}CysGlnValHisPhePheHisPheAspMet 50385 : ........................ag{GC}TgtcaagttcattttttccattttgacatG : 50513 192 : AsnArgLeuAspHisMetProIleAsnTrpLeuLeuGlnLeuAlaGlyLeu<->ProAla : 210 ||||||||||||||||||||||||||||||||||||||||||||||||:!! !.!! AsnArgLeuAspHisMetProIleAsnTrpLeuLeuGlnLeuAlaGlyValGlnLysThr 50514 : AACCGCCTGGACCACATGCCCATTAACTGGCTCCTGCAGCTTGCCGGAGTTCAAAAAACT : 50573 211 : LeuAspPheSerAspSerProLysIleIleAsnIle : 222 |||||||||||| !!.!||||||||||||:!!:!: LeuAspPheSerThrLysProLysIleIleHisVal 50574 : CTGGACTTCAGCACTAAGCCAAAGATCATCCATGTG : 50611 vulgar: SELENOU2 2 222 . KV884708.1:subseq(1584671,100000) 49037 50611 + 678 M 57 171 5 0 2 I 0 279 3 0 2 M 23 69 5 0 2 I 0 151 3 0 2 M 18 54 5 0 2 I 0 274 3 0 2 M 35 105 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 44 132 S 0 1 5 0 2 I 0 98 3 0 2 S 1 2 M 27 81 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-24 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local gene 49038 50611 678 + . gene_id 1 ; sequence SELENOU2 ; gene_orientation + KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local cds 49038 49208 . + . KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local exon 49038 49208 . + . insertions 0 ; deletions 0 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice5 49209 49210 . + . intron_id 1 ; splice_site "GT" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local intron 49209 49491 . + . intron_id 1 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice3 49490 49491 . + . intron_id 0 ; splice_site "ag" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local cds 49492 49560 . + . KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local exon 49492 49560 . + . insertions 0 ; deletions 0 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice5 49561 49562 . + . intron_id 2 ; splice_site "GT" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local intron 49561 49715 . + . intron_id 2 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice3 49714 49715 . + . intron_id 1 ; splice_site "AG" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local cds 49716 49769 . + . KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local exon 49716 49769 . + . insertions 0 ; deletions 0 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice5 49770 49771 . + . intron_id 3 ; splice_site "GT" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local intron 49770 50047 . + . intron_id 3 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice3 50046 50047 . + . intron_id 2 ; splice_site "AG" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local cds 50048 50153 . + . KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local exon 50048 50153 . + . insertions 0 ; deletions 0 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice5 50154 50155 . + . intron_id 4 ; splice_site "GT" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local intron 50154 50246 . + . intron_id 4 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice3 50245 50246 . + . intron_id 3 ; splice_site "AG" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local cds 50247 50381 . + . KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local exon 50247 50381 . + . insertions 0 ; deletions 0 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice5 50382 50383 . + . intron_id 5 ; splice_site "GT" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local intron 50382 50483 . + . intron_id 5 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local splice3 50482 50483 . + . intron_id 4 ; splice_site "aG" KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local cds 50484 50611 . + . KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local exon 50484 50611 . + . insertions 3 ; deletions 0 KV884708.1:subseq(1584671,100000) exonerate:protein2genome:local similarity 49038 50611 678 + . alignment_id 1 ; Query SELENOU2 ; Align 49038 3 171 ; Align 49492 60 69 ; Align 49716 83 54 ; Align 50048 101 105 ; Align 50249 137 132 ; Align 50486 182 81 ; Align 50570 209 42 # --- END OF GFF DUMP --- # -- completed exonerate analysis