________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-37
 Query name: gi|930725170|ref|XP_014192116.1| PREDICTED: redox-regulatory protein FAM213A-like [Haplochromis burtoni] >gi|930725172|ref|XP_014192120.1| PREDICTED: redox-regulatory protein FAM213A-like [Haplochromis burtoni]
 Query range: 1-291  (total 291)

 Target: /data/www-rg/seblastian_results/664378079/tempfiles/temptarget.fasta
 Chromosome: KV884748.1:subseq_1884943,100000_ Strand: +
 Positions:
 -Exon 1  48557        48752
 -Exon 2  49625        49810
 -Exon 3  50013        50104
 -Exon 4  50186        50326
 -Exon 5  50695        50859
 -Exon 6  50955        51047

 Redox box: YES

Query   MLALSRCSTALSWRLALRCSALSVRGSNPGSQPSTTARPQFLRTQAAPFHQSKAKASPDPNKILSV <---Intron---> LSSASGLEGELFGMGMWA
        ||||||||||| |     |||||/  |   ||||||||||||||| | |||||||/||||/|  || <   872bp    > ||| | |||||  | /|/
Target  MLALSRCSTALRWTCCPWCSALSLCSSAMNSQPSTTARPQFLRTQTALFHQSKAKSSPDPSKPDSV                LSSGSRLEGELLEMVVWS
        acgctattagtatattctttgctctatgaaacctaagacctcaacagctccaagatacgcaacgtg                tttgtacgggccgaggtt
        ttctcggccctggcggcggcctctggcctagacccccgcattgcaccttaagacacgcacgacac                ttccgcgtagattatttgc
        ggtgcataatgggatcggctcctgccttgccgcccacgcgtaacgttgtcatacacttcacgtta                ggccgcacggggtgggggt
                                                                                                            

Query   VGLGAVGAALTGIFLANTDLCLTKAANATLQYLEDADLHSTTGD <---Intron---> EKVIKAKSLWETNGAVVMAVRRPGUFLCRE <---Intro
        /||||||||| |||||||/||| | | |/||||||||| ||  / <   202bp    > /||||||||||  ||||||||||||||||| <    81bp
Target  LGLGAVGAALAGIFLANTNLCLPKVAKASLQYLEDADLCSTVDN                DKVIKAKSLWEKTGAVVMAVRRPGUFLCRE          
        cgcggggggcggattgaaactccaggagtcctcggggcttagga                gagaagaactgaaggggaggcccgttttag          
        tgtgctgcctcgtttcacatgtcatcacctaataacatgccta                aaattacagtgaacgctttctggcggttgga          
        gagtaattggtgctgcctcgtgcatcgagggccactcgcctat                ttgccaagcggggtgcgcgctaataatgcag          
                                                                                            *               

Query   n---> EASALSSLKPQLEELGVPLVAVVKEDIGTEIRDFRPHFAGDIYIDEQ <---Intron---> KHFYGPVQRRMGGLGFIRLGVWQNFMRAWRS
            > ||| ||||||||||||||||||||||/| ||||||||||||||/|// <   368bp    > ||||||/||||| || |||||||||/|||||
Target        EASELSSLKPQLEELGVPLVAVVKEDVGAEIRDFRPHFAGDIYVDKK                KHFYGPLQRRMGALGLIRLGVWQNFIRAWRS
              ggtgcttcacccggcggccggggaggggggaagtacctgggatggaa                acttgcccaaaggcgcaccggtcatacgtat
              accatcctacataatgtcttcttaaatgcatgatgcatcgatataaa                aatagctaggtgctgttgtgtgaattgcggc
              gctggctagcggagcgctgttggggctccgcgccagcttgcctacag                atcccgggggggtggccccggggccagcggt
                                                                                                            

Query   GYQGNLNGEGFVLGGVFVIGPAEQ <---Intron---> GILLEHREKEFGDKVDTADVLEAVKKIVPVK
        |||||||||||/||||||||| /| <    95bp    > |||||||||||||||/|||||||||||/| |
Target  GYQGNLNGEGFILGGVFVIGPGDQ                GILLEHREKEFGDKVNTADVLEAVKKILPGK
        gtcgatagggtacgggtgagcggc                gaccgccgagtggagaagggtgggaaatcga
        gaagatagagtttggttttgcgaa                gtttaagaaatgaataccattactaattcga
        tcgccgccgccccgagtctaaacg                gtcgactgggtttggctattagtcgaagaaa
                                                                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 507 ; UGA-SECIS: 921

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884748.1:subseq_1884943,100000_ Strand = + Positions = 51555 - 51630
 Found by:  Infernal (score=22.84) Covels (score=21.44)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 1, 0
 Free Energy = -14.07

         ..(((((((.......((((((((((.(((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .(((({((((--....([[(((((({.(((.......-...........)))}))))))]]).....-..))))})))).
 target  CGAGUGUGUG--AUAAUGAAAACCUUACUCUAAACUC-AGCAUCGAGAUGAGCAGGUUUGAGGCUUA-AACACAGAUUCA
                         ****           ^^^                        ****