_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-15
 Query name: gi|930768565|ref|XP_005948715.2| PREDICTED: selenoprotein T2-like [Haplochromis burtoni]
 Query range: 1-216  (total 216)

 Target: /data/www-rg/seblastian_results/840202997/tempfiles/temptarget.fasta
 Chromosome: KV885052.1:subseq_118965,100000_ Strand: -
 Positions:
 -Exon 1  58493        58707
 -Exon 2  57020        57130
 -Exon 3  49878        50004
 -Exon 4  49702        49789
 -Exon 5  37303        37421

 Redox box: YES

Query   MAEYSQTGLLVALFLFTALTLRDIYVGRSSSQSWHQPPD----NPAVFPDTEPGKPAKAAIYSGPVLRFQYC <---Intron---> ISUGYSKVFQDY
        ||||||  |  ||  | |||/||||/|||| |  | | |    /|   |/ |||| ||///|/||||/|||| <   1362bp   > ||||||||||/|
Target  MAEYSQANLFAALLFFMALTVRDIYLGRSSLQHGHSPGDRVGLSPDSLPEVEPGKVAKSSLYTGPVLKFQYC                ISUGYSKVFQEY
        aggtacgactggccttagtagcgatcgatacccgctcggaggctcgtccgggcgaggattctagcgcatctt                attgtaagtcgt
        tcaagacattcctttttctctgatatggcgtaagaccgagtgtccactcatacgatcacctacgcttataag                tcggagattaaa
        gggccggcctgtgcccgtagcgcttccagcggcatggtcaccccgtcgaaaacaaacgccgcagcgcgcac                tccatctagcggc
                                                                                                  *         

Query   SQAISEVYPDIRIQGENYPPTAFSR <---Intron---> CAAQLISYLKLLSILVIVSGQNPFSLLHLQTPPAWTWSQNNK <---Intron---> I
        |/|| //|||| |/|||/||| |/  <   7015bp   > | | |||||||||||/|| ||||| || | || ||||||/|| <    88bp    > |
Target  SRAIIQLYPDIHIKGENFPPTPFNS                CMANLISYLKLLSILLIVMGQNPFILLGLHTPRAWTWSQDNK                I
        tcgaacctcgacaaggatccactaa                tagacattcacctaccagagcactaccgccacagtatacgaa                a
        cgcttatacatatagaatcccctag                gtcattcatattcttttttgaacttttgtaccgcgcggaaaa                t
        taccaggcgccccgaacccaccct                ctgtcgcgcggcccctgccgtgtcccctctctcacgcgtgccg                c
                                                                                                            

Query   FSCLMAFFLCNMMETHFLSTGAFEVTLND <---Intron---> VPLWSKLQSGYVPNIQEMFQILDNHIKMNQVDHMTFTST
        ||||||||||||||||||||||||||||| <  12280bp   > /|/||||||||||||||/|||||||/|||| |||| /||
Target  FSCLMAFFLCNMMETHFLSTGAFEVTLND                IPVWSKLQSGYVPNIQEIFQILDNHLKMNQGDHMTVSST
        tttcagttctaaagactctaggtggacag                acgttacctgtgcaacgatcacgaccaaacggcaagtta
        tcgttctttgattacattccgctatcta                atctgcatacgatcataattattaaatataagaatctccc
        catggcctctcgggtccgttactgctgt                cccggggtggttctccggctgctcccgggcgatcgcccct
                                                                                            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 227 ; UGA-SECIS: 662

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV885052.1:subseq_118965,100000_ Strand = - Positions = 37075 - 37004
 Found by:  Infernal (score=38.32) Covels (score=32.92)
 Stem2 length = 11   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -27.3

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .([((((((---....{[[[(((({(((((((....-........)))))))}))))]]]}..--....))))))]).
 target  CUGGUGGCG---UUUAUGAAGGUCCGGCCCUAAAGC-AGACUCUGUGGGGCCCGGCUGGAUGU--CCUUCGCCACAAA
                         ****            ^^                       ****