Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q treball/run/SELENOT2/SELENOT2.x.fa -t treball/run/SELENOT2/SELENOT2.extraction.KV885052.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOT2 Protein # Selenoprotein T2 (SELENOT2) # Zebrafish Target: KV885052.1:subseq(118965,100000) Monopterus albus unplaced genomic scaffold scaffold364.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 703 Query range: 0 -> 209 Target range: 58707 -> 37305 1 : MetAlaGluTyrSerGlnThrGlyIleLeuThrAlaLeuLeuLeuPheThrValValThr : 20 ||||||||||||||||||.!!..!:!!!!!.!!|||||||||!!!|||! !!.!:!!||| MetAlaGluTyrSerGlnAlaAsnLeuPheAlaAlaLeuLeuPhePheMetAlaLeuThr 58707 : ATGGCGGAGTACAGCCAGGCGAACCTCTTTGCGGCTCTGCTCTTCTTCATGGCTTTAACG : 58650 21 : ValLysAspIleTyrValGlyArgAsnSerValThrGlnGlnGluAsnThrGlyPro{A} : 40 |||::!|||||||||:!!||||||:::|||:!! |||.!.... !..!|||{!} ValArgAspIleTyrLeuGlyArgSerSerLeu------GlnHisGlyHisSerPro{G} 58649 : GTCCGGGACATTTATCTCGGCAGATCGAGCCTG------CAGCACGGACATTCGCCG{G} : 58596 41 : >>>> Target Intron 1 >>>> {sp}IleAsnThrGlnArgGlnAsnLysHis : 49 36 bp {!:}:!!.!. !! !!:! ! !||| ! ++ ++{lu}ValGluProGlyLysValAlaLysSer 58595 : gt.........................ag{AA}GTAGAACCCGGAAAAGTAGCCAAGTCC : 58533 50 : ThrPheTyrThrGlyProValLeuLysPheGlnTyr{Cy} >>>> Target Intron : 62 :!!.!.||||||||||||||||||||||||||||||{||} 1362 bp SerLeuTyrThrGlyProValLeuLysPheGlnTyr{Cy}++ 58532 : TCCCTGTACACAGGGCCCGTGCTCAAGTTCCAATAC{TG}gt.................. : 58490 63 : 2 >>>> {s}IleSerUnkGlyTyrSerLysValPheGlnGluTyrSerArgSerIle : 78 {|}|||||| |||||||||||||||||||||||||||||||||:!!||| ++{s}IleSer***GlyTyrSerLysValPheGlnGluTyrSerArgAlaIle 58489 : .......ag{t}atctcCTGAGGTTACAGTAAAGTGTTCCAGGAGTACTCTCGAGCCATC : 57084 79 : SerGlnLeuTyrProAspIleArgIleGluGlyAspAsnTyrProProLysProIleAsn : 98 ! !||||||||||||||||||!.!|||:!!|||!!:|||!:!||||||! |||.!!||| IleGlnLeuTyrProAspIleHisIleLysGlyGluAsnPheProProThrProPheAsn 57083 : ATACAGCTGTACCCGGACATCCACATCAAGGGAGAAAACTTCCCCCCAACCCCCTTCAAT : 57024 99 : {Ly} >>>> Target Intron 3 >>>> {s}TyrLeuGlyAsnPheLeuSerTyr : 107 {!.} 7015 bp {.}! !:!!!.!|||.!.:!!|||||| {Se}++ ++{r}CysMetAlaAsnLeuIleSerTyr 57023 : {AG}gt.........................ag{C}TGTATGGCTAACCTGATCTCGTAC : 49982 108 : PheLysLeuLeuAlaIleAlaLeuIleValThrGlyGlnAsnProPheGlnMetPheGly : 127 .!.|||||||||:!!||| !|||||||||! !||||||||||||||| :!:.!!||| LeuLysLeuLeuSerIleLeuLeuIleValMetGlyGlnAsnProPheIleLeuLeuGly 49981 : CTGAAGCTCCTCTCCATCCTTCTGATCGTCATGGGTCAGAATCCCTTCATCCTCCTTGGC : 49922 128 : MetAsnThrProArgIleTrpAlaTrpGlyGlnGluAsnLys >>>> Target Intr : 142 :!::!!||||||||| !|||.!!|||.!!|||!!:|||||| 88 bp LeuHisThrProArgAlaTrpThrTrpSerGlnAspAsnLys++ 49921 : CTTCACACTCCCAGAGCCTGGACCTGGAGTCAGGACAACAAGgt................ : 49875 143 : on 4 >>>> IlePheSerCysLeuMetAlaPhePheIleSerAsnMetLeuGluThrH : 158 |||||||||||||||||||||||||||:!!!!!||||||:!!||||||| ++IlePheSerCysLeuMetAlaPhePheLeuCysAsnMetMetGluThrH 49874 : .........agATCTTCTCATGTCTGATGGCCTTCTTTCTCTGTAACATGATGGAGACTC : 49741 159 : isPheLeuSerThrGlyAlaPheGluIleThrLeuAsn{A} >>>> Target Intro : 171 ||||||||||||||||||||||||||:!!|||||||||{|} 12280 bp isPheLeuSerThrGlyAlaPheGluValThrLeuAsn{A}++ 49740 : ACTTCCTGTCTACTGGAGCCTTTGAGGTCACTCTGAAT{G}gt................. : 49699 172 : n 5 >>>> {sp}IleProIleTrpSerLysLeuGlnSerGlyTyrValProAsnIleG : 187 {||}||||||:!:||||||||||||||||||||||||||||||||||||| ++{sp}IleProValTrpSerLysLeuGlnSerGlyTyrValProAsnIleG 49698 : ........ag{AC}ATCCCCGTGTGGTCGAAGCTTCAGTCGGGTTATGTCCCTAACATCC : 37374 188 : lnGluLeuPheGlnIleLeuAspAsnHisLeuLysMetAsnGlnAlaAspLysMetAsnP : 207 |||||:!!||||||||||||||||||||||||||||||||||||!.!||| ! |||!.! lnGluIlePheGlnIleLeuAspAsnHisLeuLysMetAsnGlnGlyAspHisMetThrV 37373 : AGGAGATCTTTCAGATCCTTGACAACCACCTGAAGATGAACCAGGGAGATCACATGACCG : 37314 208 : heProSer : 209 !! !!||| alSerSer 37313 : TCTCCTCC : 37306 vulgar: SELENOT2 0 209 . KV885052.1:subseq(118965,100000) 58707 37305 - 703 M 31 93 G 2 0 M 6 18 S 0 1 5 0 2 I 0 32 3 0 2 S 1 2 M 21 63 S 0 2 5 0 2 I 0 1358 3 0 2 S 1 1 M 36 108 S 0 2 5 0 2 I 0 7011 3 0 2 S 1 1 M 42 126 5 0 2 I 0 84 3 0 2 M 29 87 S 0 1 5 0 2 I 0 12276 3 0 2 S 1 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-01 ##type DNA # # # seqname source feature start end score strand frame attributes # KV885052.1:subseq(118965,100000) exonerate:protein2genome:local gene 37306 58707 703 - . gene_id 1 ; sequence SELENOT2 ; gene_orientation + KV885052.1:subseq(118965,100000) exonerate:protein2genome:local cds 58596 58707 . - . KV885052.1:subseq(118965,100000) exonerate:protein2genome:local exon 58596 58707 . - . insertions 0 ; deletions 2 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice5 58594 58595 . - . intron_id 1 ; splice_site "GT" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local intron 58560 58595 . - . intron_id 1 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice3 58560 58561 . - . intron_id 0 ; splice_site "AG" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local cds 58493 58559 . - . KV885052.1:subseq(118965,100000) exonerate:protein2genome:local exon 58493 58559 . - . insertions 0 ; deletions 0 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice5 58491 58492 . - . intron_id 2 ; splice_site "GT" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local intron 57131 58492 . - . intron_id 2 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice3 57131 57132 . - . intron_id 1 ; splice_site "ag" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local cds 57020 57130 . - . KV885052.1:subseq(118965,100000) exonerate:protein2genome:local exon 57020 57130 . - . insertions 0 ; deletions 0 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice5 57018 57019 . - . intron_id 3 ; splice_site "GT" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local intron 50005 57019 . - . intron_id 3 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice3 50005 50006 . - . intron_id 2 ; splice_site "AG" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local cds 49878 50004 . - . KV885052.1:subseq(118965,100000) exonerate:protein2genome:local exon 49878 50004 . - . insertions 0 ; deletions 0 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice5 49876 49877 . - . intron_id 4 ; splice_site "GT" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local intron 49790 49877 . - . intron_id 4 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice3 49790 49791 . - . intron_id 3 ; splice_site "AG" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local cds 49702 49789 . - . KV885052.1:subseq(118965,100000) exonerate:protein2genome:local exon 49702 49789 . - . insertions 0 ; deletions 0 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice5 49700 49701 . - . intron_id 5 ; splice_site "GT" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local intron 37422 49701 . - . intron_id 5 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local splice3 37422 37423 . - . intron_id 4 ; splice_site "AG" KV885052.1:subseq(118965,100000) exonerate:protein2genome:local cds 37306 37421 . - . KV885052.1:subseq(118965,100000) exonerate:protein2genome:local exon 37306 37421 . - . insertions 0 ; deletions 0 KV885052.1:subseq(118965,100000) exonerate:protein2genome:local similarity 37306 58707 703 - . alignment_id 1 ; Query SELENOT2 ; Align 58708 1 93 ; Align 58615 34 18 ; Align 58558 41 63 ; Align 57130 63 108 ; Align 50004 100 126 ; Align 49790 142 87 ; Align 37420 172 114 # --- END OF GFF DUMP --- # -- completed exonerate analysis