Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/SELENOT1.x.fa -t SELENOT1.extraction.KV884716.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOT1 # Protein # Selenoprotein T1 (SELENOT1) # Zebrafish Target: KV884716.1:subseq(1091911,100000) Monopterus albus unplaced genomic scaffold scaffold28.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 724 Query range: 3 -> 178 Target range: 51707 -> 45128 4 : MetArgTrpLeuProPheSerAlaLeuLeuLeuTrpAlaLeuCysLeuHisSerAla<-> : 23 |||!:!||||||! !|||||| !|||:!!||| !!!.!|||! ||| !!!!||| MetLysTrpLeuArgPheSerPheLeuValLeuGlyValLeuSerLeuCysCysAlaThr 51707 : ATGAAGTGGCTGCGTTTTTCCTTCCTCGTCCTGGGGGTTTTGTCATTGTGCTGTGCCACA : 51650 24 : SerAlaAspAsnAsnGlyValLysLysMetLysMetGlnPheAlaThrGlyProLeuLeu : 42 |||!.!|||!:!|||...:::||||||||||||||||||||||||||||||||||||||| SerGlyAspSerAsnSerIleLysLysMetLysMetGlnPheAlaThrGlyProLeuLeu 51649 : TCTGGTGATAGCAACAgcataaagaaaatgaagatgCAGTTTGCTACGGGACCACTTCTC : 51590 43 : LysPheGlnIle{Cy} >>>> Target Intron 1 >>>> {s}ValSerUnkGly : 51 ||||||||||||{||} 1575 bp {|}:!!||| ||| LysPheGlnIle{Cy}++ ++{s}IleSer***Gly 51589 : AAATTTCAAATT{TG}gt.........................ag{C}ATCTCCTGAGGG : 49988 52 : TyrLysArgValPheGluGluTyrThrGlnAlaLeuTyrGlnArgTyrProAspIleArg : 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TyrLysArgValPheGluGluTyrThrGlnAlaLeuTyrGlnArgTyrProAspIleArg 49987 : TACAAGCGGGTGTTTGAGGAGTACACGCAGGCCTTGTACCAGCGGTACCCAGACATCCGC : 49928 72 : IleGluGlyGluAsnTyrLeuProLeuProLeuTyr{Ar} >>>> Target Intron : 84 ||||||||||||||||||||||||:!!|||:!!|||{||} 2880 bp IleGluGlyGluAsnTyrLeuProMetProIleTyr{Ar}++ 49927 : ATTGAAGGGGAGAACTATCTCCCTATGCCCATCTAT{CG}gt.................. : 49885 85 : 2 >>>> {g}HisIleAlaSerPheLeuSerMetPheLysLeuLeuLeuIleGlyVal : 100 {|}||||||||||||.!!||||||!!:||||||||||||:!!||||||:!! ++{g}HisIleAlaSerIleLeuSerIlePheLysLeuLeuValIleGlyLeu 49884 : .......ag{a}CACATTGCTTCCATCCTGTCTATTTTCAAACTGCTGGTGATTGGGCTG : 46961 101 : IleIleLeuGlyLysAspProPheAlaLeuCysGlyMetGlnAlaProGlyIleTrpVal : 120 :!!|||:!!|||||||||||||||||||||! !||||||||||||||||||||||||! ! ValIleValGlyLysAspProPheAlaLeuPheGlyMetGlnAlaProGlyIleTrpGlu 46960 : GTTATTGTTGGCAAGGACCCATTCGCCCTCTTTGGTATGCAAGCCCCAGGTATCTGGGAG : 46901 121 : TrpSerGlnGluAsnLys >>>> Target Intron 3 >>>> IleTyrAlaCysM : 131 |||.!!|||! |||||| 1327 bp ||||||||||||| TrpGlyGlnAlaAsnLys++ ++IleTyrAlaCysM 46900 : TGGGGTCAGGCTAATAAGgt.........................agATTTATGCCTGCA : 45541 132 : etMetValPhePhePheSerAsnMetIleGluAsnGlnCysMetSerThrGlyAlaPheG : 151 ||||||||||||||||||||||||||||||||||||||! ||||||||||||||||||| etMetValPhePhePheSerAsnMetIleGluAsnGlnLeuMetSerThrGlyAlaPheG 45540 : TGATGGTGTTCTTCTTCAGCAATATGATTGAAAACCAGTTAATGTCTACAGGAGCTTTTG : 45481 152 : luIleThrLeuAsn{A} >>>> Target Intron 4 >>>> {sp}ValProValT : 160 ||||||||||||||{|} 269 bp {||}|||||||||| luIleThrLeuAsn{A}++ ++{sp}ValProValT 45480 : AAATCACATTAAAT{G}gt.........................ag{AT}GTGCCCGTCT : 45185 161 : rpSerLysLeuGluSerGlyHisLeuProSerMetGlnGlnLeuValGlnIleLeu : 178 ||||||||||||||||||||!!.||||||||||||||||||||||||||||||||| rpSerLysLeuGluSerGlyGlnLeuProSerMetGlnGlnLeuValGlnIleLeu 45184 : GGTCAAAACTGGAATCAGGTCAGCTGCCTTCCATGCAGCAGCTTGTGCAGATCCTG : 45129 vulgar: SELENOT1 3 178 . KV884716.1:subseq(1091911,100000) 51707 45128 - 724 M 19 57 G 0 3 M 24 72 S 0 2 5 0 2 I 0 1571 3 0 2 S 1 1 M 36 108 S 0 2 5 0 2 I 0 2876 3 0 2 S 1 1 M 42 126 5 0 2 I 0 1323 3 0 2 M 29 87 S 0 1 5 0 2 I 0 265 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local gene 45129 51707 724 - . gene_id 1 ; sequence SELENOT1 ; gene_orientation + KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local cds 51574 51707 . - . KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local exon 51574 51707 . - . insertions 3 ; deletions 0 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice5 51572 51573 . - . intron_id 1 ; splice_site "GT" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local intron 49999 51573 . - . intron_id 1 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice3 49999 50000 . - . intron_id 0 ; splice_site "AG" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local cds 49888 49998 . - . KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local exon 49888 49998 . - . insertions 0 ; deletions 0 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice5 49886 49887 . - . intron_id 2 ; splice_site "GT" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local intron 47008 49887 . - . intron_id 2 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice3 47008 47009 . - . intron_id 1 ; splice_site "ag" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local cds 46881 47007 . - . KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local exon 46881 47007 . - . insertions 0 ; deletions 0 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice5 46879 46880 . - . intron_id 3 ; splice_site "GT" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local intron 45554 46880 . - . intron_id 3 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice3 45554 45555 . - . intron_id 2 ; splice_site "AG" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local cds 45466 45553 . - . KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local exon 45466 45553 . - . insertions 0 ; deletions 0 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice5 45464 45465 . - . intron_id 4 ; splice_site "GT" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local intron 45197 45465 . - . intron_id 4 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local splice3 45197 45198 . - . intron_id 3 ; splice_site "AG" KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local cds 45129 45196 . - . KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local exon 45129 45196 . - . insertions 0 ; deletions 0 KV884716.1:subseq(1091911,100000) exonerate:protein2genome:local similarity 45129 51707 724 - . alignment_id 1 ; Query SELENOT1 ; Align 51708 4 57 ; Align 51648 23 72 ; Align 49998 48 108 ; Align 47007 85 126 ; Align 45554 127 87 ; Align 45195 157 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis