Command line: [exonerate -m p2g --showtargetgff -q SELENOS.x.fa -t SELENOS.extraction.KV884994.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOS Protein # Selenoprotein S (SELENOS) # Zebrafish Target: KV884994.1:subseq(555013,100000) Monopterus albus unplaced genomic scaffold scaffold306.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 11 -> 190 Target range: 44042 -> 62483 12 : GluAspValProProGlnAsnGlnAspLeuSerPheLeuGlnProSer{V} >>>> Ta : 28 ||| ! ||||||! !:!!|||||||||||||||! !|||...! !! !{!} GluLysValProLeuLysAsnGlnAspLeuSerSerLeuSerLeuIle{A}++ 44043 : GAAAAGGTGCCCCTCAAAAACCAGGATCTGAGTTCCCTGAGCCTAATT{G}gt....... : 44094 29 : rget Intron 1 >>>> {al}ThrAlaPheMetSerGluTyrGlyTrpTyrLeuLeu : 40 2336 bp {.!} !! !.!!:!!|||:!!|||||||||||||||||| ++{la}GlyGluLeuLeuSerGlnTyrGlyTrpTyrLeuLeu 44095 : ..................ag{CA}GGGGAACTTCTGTCCCAGTATGGGTGGTACCTCCTG : 46463 41 : PheGlyCysValGlyValTyrLeuLeuIleGlnHisLeuArgLysSerArgSer{Se} : 59 !! ! !||| !:!!||||||||||||!!.|||||| !!|||!!!||||||{||} ValLeuThrValLeuLeuTyrLeuLeuIleHisHisLeuGlyLysArgArgSer{Se}-- 46464 : GTTTTGACTGTGCTGCTCTACCTGCTCATCCACCACCTGGGAAAGAGGAGATCC{AG}tc : 46522 60 : >>>> Target Intron 2 >>>> {r}ThrGlnThrArgSerSerSerGlySerAla : 69 3438 bp {|} ! !! !||||||! !..!!!!..! ++{r}GluAla***MetSerSerLeuAsnCysCys 46523 : .........................ag{T}GAAGCTTAAATGTCATCATTGAACTGTTGT : 49988 70 : GluAlaHisAspValGlySerValValArgArgGlnGluAlaLeuGluAlaSerArgArg : 89 ! ! ! |||!.!!.!! !|||!.!|||||||||||||||:!!||||||:!!|||||| TyrTyr***AspAlaAlaLeuValAlaArgArgGlnGluAlaMetGluAlaAlaArgArg 49989 : TATTATTAAGATGCTGCTTTAGTGGCAAGAAGACAAGAAGCCATGGAGGCAGCTCGAAGA : 50048 90 : ArgMetGlnGluGluGlnAspAlaArgAlaAlaGluPheArgGluLysGlnArgMet > : 109 !:!||||||||||||! ||||||!:!|||||| ||||||||||||||||||... LysMetGlnGluGluLeuAspAlaLysAlaAlaIlePheArgGluLysGlnArgGln++ 50049 : AAGATGCAAGAGGAACTTGATGCCAAAGCAGCCATcttcagagaaaaacagagacaggt. : 50110 110 : >>> Target Intron 3 >>>> LeuGluGluGluLysArgArgGlnLysIleGluM : 120 93 bp ||||||||||||||||||||||||||||||| ++GlnGluGluGluLysArgArgGlnLysIleGluM 50111 : ........................agcaagaagaagagaagaggagacagaaaatagaaa : 50234 121 : etTrpAspSerMetGlnGluGlyLys >>>> Target Intron 4 >>>> SerTy : 130 |||||.!.||| ::!! !.!||| 3062 bp |||!: etTrpGlnSerGluArgAlaAlaLys+- ++SerPh 50235 : tgtgGCAGAGTGAAAGAGCTGCAAAGga.........................agTCCTT : 53326 131 : rLysGlySerAlaLysValAlaGlnGlnAsnThrGluGluAlaAlaSerSerSerSerLe : 150 !! ! ! !:!! ! ! !|||:!!::: !|||! ::!:!!|||!!!!!! !|| eThrValValSerAsp***LeuGlnLysSerGluGluAlaSerSerSerThrThrValLe 53327 : CACTGTAGTATCTGATTAACTGCAGAAATCAGAAGAGGCCAGCTCATCAACAACAGTCCT : 53386 151 : uArgProLysThrGluLysLysProLeuArgSerSer{G} >>>> Target Intron : 163 |!:!|||||||||!!:||||||||||||||||||:!!{!} 8975 bp uLysProLysThrAspLysLysProLeuArgSerAla{A}++ 53387 : GAAGCCCAAGACGGATAAAAAGCCACTTCGCAGTGCT{G}gt.................. : 53428 164 : 5 >>>> {ly}TyrSerProLeuSerGlyAspAlaGlyGlySerCysSerTrpArgPr : 179 { !}|||!:!||||||!!!|||.!.!.!||||||||||||||||||||||| ++{sp}TyrAsnProLeuThrGlyGlnGlyGlyGlySerCysSerTrpArgPr 53429 : .......ag{ac}taCAATCCCCTGACTGGTCAGGGAGGAGGCTCCTGTTCCTGGAGGCC : 62448 180 : oGlyArgArgGlyProSerAlaGlyGlyUnkGly : 190 |||||||||||||||||||:!!|||||| ||| oGlyArgArgGlyProSerSerGlyGly***Gly 62449 : TGGCAGGAGAGGGCCGTCATCTGGTGGATGAGGT : 62483 vulgar: SELENOS 11 190 . KV884994.1:subseq(555013,100000) 44042 62483 + 391 M 16 48 S 0 1 5 0 2 I 0 2332 3 0 2 S 1 2 M 30 90 S 0 2 5 0 2 I 0 3434 3 0 2 S 1 1 M 49 147 5 0 2 I 0 89 3 0 2 M 20 60 5 0 2 I 0 3058 3 0 2 M 34 102 S 0 1 5 0 2 I 0 8971 3 0 2 S 1 2 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-24 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884994.1:subseq(555013,100000) exonerate:protein2genome:local gene 44043 62483 391 + . gene_id 1 ; sequence SELENOS ; gene_orientation + KV884994.1:subseq(555013,100000) exonerate:protein2genome:local cds 44043 44091 . + . KV884994.1:subseq(555013,100000) exonerate:protein2genome:local exon 44043 44091 . + . insertions 0 ; deletions 0 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice5 44092 44093 . + . intron_id 1 ; splice_site "GT" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local intron 44092 46427 . + . intron_id 1 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice3 46426 46427 . + . intron_id 0 ; splice_site "AG" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local cds 46428 46521 . + . KV884994.1:subseq(555013,100000) exonerate:protein2genome:local exon 46428 46521 . + . insertions 0 ; deletions 0 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice5 46522 46523 . + . intron_id 2 ; splice_site "TC" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local intron 46522 49959 . + . intron_id 2 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice3 49958 49959 . + . intron_id 1 ; splice_site "AG" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local cds 49960 50107 . + . KV884994.1:subseq(555013,100000) exonerate:protein2genome:local exon 49960 50107 . + . insertions 0 ; deletions 0 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice5 50108 50109 . + . intron_id 3 ; splice_site "gt" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local intron 50108 50200 . + . intron_id 3 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice3 50199 50200 . + . intron_id 2 ; splice_site "ag" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local cds 50201 50260 . + . KV884994.1:subseq(555013,100000) exonerate:protein2genome:local exon 50201 50260 . + . insertions 0 ; deletions 0 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice5 50261 50262 . + . intron_id 4 ; splice_site "GA" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local intron 50261 53322 . + . intron_id 4 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice3 53321 53322 . + . intron_id 3 ; splice_site "AG" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local cds 53323 53425 . + . KV884994.1:subseq(555013,100000) exonerate:protein2genome:local exon 53323 53425 . + . insertions 0 ; deletions 0 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice5 53426 53427 . + . intron_id 5 ; splice_site "GT" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local intron 53426 62400 . + . intron_id 5 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local splice3 62399 62400 . + . intron_id 4 ; splice_site "ag" KV884994.1:subseq(555013,100000) exonerate:protein2genome:local cds 62401 62483 . + . KV884994.1:subseq(555013,100000) exonerate:protein2genome:local exon 62401 62483 . + . insertions 0 ; deletions 0 KV884994.1:subseq(555013,100000) exonerate:protein2genome:local similarity 44043 62483 391 + . alignment_id 1 ; Query SELENOS ; Align 44043 12 48 ; Align 46430 29 90 ; Align 49961 60 147 ; Align 50201 109 60 ; Align 53323 129 102 ; Align 62403 164 81 # --- END OF GFF DUMP --- # -- completed exonerate analysis