_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-30
 Query name: gi|908520194|ref|XP_005475970.2| PREDICTED: selenoprotein Pb-like [Oreochromis niloticus]
 Query range: 1-183  (total 274)

 Target: /data/www-rg/seblastian_results/285274895/tempfiles/temptarget.fasta
 Chromosome: KV884754.1:subseq_512622,100000_ Strand: -
 Positions:
 -Exon 1  51155        51381
 -Exon 2  49798        50010
 -Exon 3  49273        49381

 Redox box: YES

Query   MSSLLTLWLFAALPGLLWASHSTLIVEGDNDASRICKPAPQWDIKGYAPMQDLLGNVAVVALLKATUQFCLKQASK <---Intron---> IGGLRDRL
        |||/| |||   |||||||||/|| /||||||||||||||/|/||| |||///|||| |||||||/||||| ||   <   1144bp   > / |||//|
Target  MSSILLLWLCVTLPGLLWASHATLFLEGDNDASRICKPAPKWEIKGQAPMKEVLGNVVVVALLKASUQFCLIQAYG                MRGLREKL
        attattctctgatcgcctgtcgacttgggaggtaatacgcatgaagcgcaaggcgagggggccagatcttcacgtg                acgccgac
        tccttttgtgtctcgttgccacctttagaaaccgtgacccagatagacctaattgattttcttacggatgttacag                tggtgaat
        gcccggggatgtgatggggatccctgggcttccgccgcccggaagagacgagtgatgcgggaagccaactctgcc                cgacgtgag
                                                                          *                                 

Query   NRSNMTEVSFIIVNERDAHSRAMYWELKRSAPTGVPVFQQQPFQNDVWEALDGDKDDFLVYDR <---Intron---> CGLLTFHIVMPYSFLHHPFVE
          ||/|/|||/||||/|  ||| |//|/|||| ||||/||   ||||||||||||||||/||| <   416bp    > |||||/||||||||||/|/||
Target  KLSNLTDVSFMIVNEQDVLSRATYYQLERSAPPGVPVYQQDHLQNDVWEALDGDKDDFLIYDR                CGLLTYHIVMPYSFLHYPYVE
        acaacaggttaagagcggctagattccgaagccggcgtccgcccaggtggcgggaggtcatga                tgccatcagactatcctctgg
        atgatcatcttttaaaattcgccaaataggcccgtctaaaaataaatgactagaaaatttaag                ggttcaatttcagttaacata
        gcccgatgtcgagcgatttcaatctgggacgcttttgcggtctatcgggtgtccacccgttt                gttccctcagggctcaccctaa
                                                                                                            

Query   AAIRATYQKNICNCT
         |||||| ||||||/
Target  GAIRATYHKNICNCS
        ggaagatcaaatatt
        gctgccaaaatgagc
        tacacttcatcctct
                       
 Sequence until next stop: 
GTGAGTAACCTCAAGAATGCACACGCACAACAAGTGATTCTGAATAGAGTTTCAGTTTACAATGAAATACTCACTCAATCAAAAAATAAATACAGTGCCATGCCCCCTTTGAATTAA
 V  S  N  L  K  N  A  H  A  Q  Q  V  I  L  N  R  V  S  V  Y  N  E  I  L  T  Q  S  K  N  K  Y  S  A  M  P  P  L  N  * 

 Distance CDS-SECIS: 879 ; UGA-SECIS: 1227

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884754.1:subseq_512622,100000_ Strand = - Positions = 48393 - 48316
 Found by:  Infernal (score=30.43) Covels (score=24.82)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -18.79

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...(((((((......{[[{((((((((([(................)])))))))))}]]}.....-.-)))))))...
 target  UGUCUUCUCUCAUUAGUGAAGUCUGCAGUGGAAAACCUGCCUGCAGGCAGCUGUAGAUCGAUGUGUG-U-GGAGAAGUGG
                         ****           ^^^                        ****