Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q treball/run/SELENOP/SELENOP.x.fa -t treball/run/SELENOP/SELENOP.extraction.KV884754.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOP Protein # Selenoprotein P (SELENOP) # Zebrafish Target: KV884754.1:subseq(512622,100000) Monopterus albus unplaced genomic scaffold scaffold66.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 677 Query range: 4 -> 321 Target range: 95063 -> 3899 5 : TrpProLeuLeuLeuSerAla{P} >>>> Target Intron 1 >>>> {he}Pro : 13 ||||||:!!:!!:!!!!! !{!} 43703 bp { !}! ! TrpProIleMetIleThrLeu{C}++ ++{ys}Leu 95063 : TGGCCTATTATGATAACTCTA{T}gt.........................ag{GT}CTG : 51336 14 : AlaLeuLeuGlyAlaSerSerLeuPheValGluLysGluSerSerGlySerArgIleCys : 33 !! ! !..! !:!!!!!||||||:!!||| !!!:!:!..!!.!|||||||||||| LeuTrpAlaSerHisAlaThrLeuPheLeuGluGlyAspAsnAspAlaSerArgIleCys 51335 : CTGTGGGCGTCACATGCCACCCTCTTTTTGGAGGGGGACAATGATGCCTCCAGGATCTGC : 51276 34 : LysProAlaProGlnTrpGluIleAspGlyLysThrProMetLysGluLeuLeuGlyAsn : 53 ||||||||||||:!!||||||||| ! |||:!!.!!||||||||||||:!!||||||||| LysProAlaProLysTrpGluIleLysGlyGlnAlaProMetLysGluValLeuGlyAsn 51275 : AAGCCCGCCCCCAAGTGGGAAATAAAGGGACAGGCACCCATGAAAGAGGTTCTGGGAAAT : 51216 54 : ValValValValAlaLeuLeuLysAlaSerUnkHisPheCysLeuThrGlnAlaAla{Ar : 73 |||||||||||||||||||||||||||||| !!.|||||||||! !|||||| { ! ValValValValAlaLeuLeuLysAlaSer***GlnPheCysLeuIleGlnAlaTyr{Gl 51215 : GTGGTCGTGGTGGCGCTACTAAAGGCCAGCTGACAATTCTGTCTCATTCAGGCCTAc{gg : 51156 74 : } >>>> Target Intron 2 >>>> {g}LeuGlyAspLeuArgAspLysLeuAla : 82 } 1144 bp {!}:!! !!! !||||||!!:|||||| ! }++ ++{y}MetArgGlyLeuArgGluLysLeuLys 51155 : }gt.........................ag{C}ATGCGAGGCCTGCGTGAGAAACTGAAG : 49985 83 : AsnGlyGlyLeuThrAsnIleSerPheMetValValAsnGluGlnAspSerGlnSerArg : 102 !.!!..!||||||:!!:!:|||||||||:!!||||||||||||||| !! |||||| LeuSerAsnLeuThrAspValSerPheMetIleValAsnGluGlnAspValLeuSerArg 49984 : CTCAGCAACCTGACAGATGTGTCTTTCATGATAGTGAACGAGCAAGATGTTCTTTCCAGA : 49925 103 : AlaMetTyrTrpGluLeuLysArgArgThrAlaGlnAspIleProValTyrGlnGlnSer : 122 |||! |||!:::!!|||:!!|||!!!.!! !!! ! !:!!|||||||||||||||..! AlaThrTyrTyrGlnLeuGluArgSerAlaProProGlyValProValTyrGlnGlnAsp 49924 : GCAACTTACTATCAGCTGGAGAGAAGCGCGCCCCCTGGTGTTCCTGTGTACCAGCAGGAT : 49865 123 : ProLeuGlnAsnAspValTrpGluIleLeuGluGlyAspLysAspAspPheLeuValTyr : 142 ! !||||||||||||||||||||| !|||!!:|||||||||||||||||||||:!!||| HisLeuGlnAsnAspValTrpGluAlaLeuAspGlyAspLysAspAspPheLeuIleTyr 49864 : CACCTTCAAAATGACGTGTGGGAGGCTCTGGATGGCGACAAAGACGACTTCCTGATTTAT : 49805 143 : Asp{Ar} >>>> Target Intron 3 >>>> {g}CysGlyTyrLeuThrPheHis : 151 |||{||} 416 bp {|}|||||| !||||||!:!||| Asp{Ar}++ ++{g}CysGlyLeuLeuThrTyrHis 49804 : GAT{AG}gt.........................ag{G}TGTGGTCTCCTCACCTATCAC : 49362 152 : IleValLeuProPheSerPheLeuHisTyrProTyrIleGluAlaAlaIleArgAlaThr : 171 ||||||:!!|||!:!|||||||||||||||||||||:!!|||!.!||||||||||||||| IleValMetProTyrSerPheLeuHisTyrProTyrValGluGlyAlaIleArgAlaThr 49361 : ATAGTGATGCCGTACAGTTTCCTACACTACCCCTATGTAGAAGGTGCAATCAGAGCCACT : 49302 172 : TyrHisLysAsnMetCysAsnCysSerLeu<->AsnAlaAsnPheSerIleSerGluSer : 190 ||||||||||||!!:||||||||||||:!! ||| !!!. !:!! !:!!:!!..! TyrHisLysAsnIleCysAsnCysSerValSerAsnLeuLysAsnAlaHisAlaGlnGln 49301 : TATCACAAAAATATCTGCAATTGCTCTGTGAGTAACCTCAAGAATGCACACGCACAACAA : 49242 191 : >>>> Target Intron 4 >>>> SerAspSerThrLysAsnGluProAlaGlyG : 201 354 bp :!!:!!|||||| !:::... ! !! ! ++ ++AlaAsnSerThrLeuSerSerGlyMetGluI 49241 : gt.........................agGCTAATTCTACTTTATCGAGTGGCATGGAAA : 48855 202 : luAsnAsnGlnArgProAsn >>>> Target Intron 5 >>>> SerThrGluPr : 211 !:!|||:!!! ! !::: 60 bp ..! !!!: leSerAsnGluThrValSer++ ++GluGlyAspLy 48854 : TCAGCAATGAGACAGTATCGgt.........................agGAGGGAGACAA : 48765 212 : oValThrAlaAlaHisHisHisHisHisGlnGlnHisGluProHisHisHisHisAsnPr : 231 !!.! !!!.!::!||||||||| |||... |||...||||||||||||! !:!! sAlaProGlySerHisHisHisValHisHisProHisHisProHisHisHisProHisTy 48764 : AGCACCGGGGAGTCATCATCATGtccatcatcctcatcatcctcaccATCATCCCCACTA : 48705 232 : oTyrProAsnAsnHisLysLysSerGlyAspSerAspValThrGlyLysProLysGluPr : 251 !:!! !!!:!:!! !!!.:!!||| ! !!..!.!.! !! !.!! ! !!...!.|| rHisThrSerHisSerAsnGlnSerGlnHisGlnGlnAspLysSerHisLysSerHisPr 48704 : TCATACCAGTCACAGCAACCAGTCCCAACATCAGCAGGATAAAAGTCATAAAAGTCATCC : 48645 252 : oThrHisHisSerHisGlnGluHisValHisAsnHis{Ar} >>>> Target Intro : 264 | !:!!||| !|||.!.!!:.!. !|||.!.|||{||} 13637 bp oHisTyrHisHisHisAspAspGluHisHisGlnHis{Ar}-+ 48644 : CCACTACCACCATCATGATGATGAGCATCATCAGCAT{AG}at................. : 48602 265 : n 6 >>>> {g}PheTyrThrValPheSerPheIle >>>> Target Intron 7 : 273 {|}... |||::: 988 bp ++{g}IleArgIleSerPheThrGlyGln++ 48601 : ........ag{a}atcagaatcagctttactggccaggt..................... : 34940 274 : >>>> IleLeuPheTyrIleMetPhePhePhePheValAsnIleTrpSerCysSerCys : 290 :!:|||||| .!!||||||!:!!!.!:! !!.!|||!! ! |||... ++ValLeuPheProPheMetPheTyrLeuTyrProThrIleCysPheCysGluLys 34939 : ....agGTGCTATTTCCATTTATGTTTTACTTGTACCCAACCATCTGCTtttgtgaaaaa : 33903 291 : ValArgThrSerTyrLeuProGlnArg{G} >>>> Target Intron 8 >>>> { : 300 ::::::::: ||| !..!|||{!} 29084 bp { LeuLysSerLeuAlaLeuTyrMetArg{V}++ ++{ 33902 : ctgaaatctttaGCACTGTATATGAGA{G}gt.........................ag{ : 4788 301 : ly}ValPheGlyCysLeuGlnCysIlePheValLeu >>>> Target Intron 9 > : 312 !}|||||| ||||||||| ||| ... 824 bp al}ValPheLeuCysLeuGlnSerTyrPheAspPhe++ 4787 : tt}gtttttttatgtttgcagtcttattttgattttgt...................... : 4751 313 : >>> AsnGluValTyrThrLeuAsnLeuArgGln : 321 |||:::::: ! !|||:!! !!:!||| ++AsnLysIleSerCysLeuHisAsnLysGln 4750 : ...agaacaaaatttCTTGTTTACATAACAAGCAG : 3900 vulgar: SELENOP 4 321 . KV884754.1:subseq(512622,100000) 95063 3899 - 677 M 7 21 S 0 1 5 0 2 I 0 43699 3 0 2 S 1 2 M 60 180 S 0 2 5 0 2 I 0 1140 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 412 3 0 2 S 1 1 M 37 111 G 0 3 M 9 27 5 0 2 I 0 350 3 0 2 M 17 51 5 0 2 I 0 56 3 0 2 M 56 168 S 0 2 5 0 2 I 0 13633 3 0 2 S 1 1 M 8 24 5 0 2 I 0 984 3 0 2 M 27 81 S 0 1 5 0 2 I 0 29080 3 0 2 S 1 2 M 11 33 5 0 2 I 0 820 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-01 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884754.1:subseq(512622,100000) exonerate:protein2genome:local gene 3900 95063 677 - . gene_id 1 ; sequence SELENOP ; gene_orientation + KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 95042 95063 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 95042 95063 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 95040 95041 . - . intron_id 1 ; splice_site "GT" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 51339 95041 . - . intron_id 1 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 51339 51340 . - . intron_id 0 ; splice_site "AG" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 51155 51338 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 51155 51338 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 51153 51154 . - . intron_id 2 ; splice_site "gt" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 50011 51154 . - . intron_id 2 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 50011 50012 . - . intron_id 1 ; splice_site "AG" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 49798 50010 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 49798 50010 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 49796 49797 . - . intron_id 3 ; splice_site "GT" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 49382 49797 . - . intron_id 3 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 49382 49383 . - . intron_id 2 ; splice_site "AG" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 49240 49381 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 49240 49381 . - . insertions 3 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 49238 49239 . - . intron_id 4 ; splice_site "GT" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 48886 49239 . - . intron_id 4 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 48886 48887 . - . intron_id 3 ; splice_site "AG" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 48835 48885 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 48835 48885 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 48833 48834 . - . intron_id 5 ; splice_site "GT" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 48775 48834 . - . intron_id 5 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 48775 48776 . - . intron_id 4 ; splice_site "AG" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 48605 48774 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 48605 48774 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 48603 48604 . - . intron_id 6 ; splice_site "AT" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 34968 48604 . - . intron_id 6 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 34968 34969 . - . intron_id 5 ; splice_site "ag" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 34943 34967 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 34943 34967 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 34941 34942 . - . intron_id 7 ; splice_site "gt" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 33955 34942 . - . intron_id 7 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 33955 33956 . - . intron_id 6 ; splice_site "AG" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 33873 33954 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 33873 33954 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 33871 33872 . - . intron_id 8 ; splice_site "GT" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 4789 33872 . - . intron_id 8 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 4789 4790 . - . intron_id 7 ; splice_site "ag" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 4754 4788 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 4754 4788 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice5 4752 4753 . - . intron_id 9 ; splice_site "gt" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local intron 3930 4753 . - . intron_id 9 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local splice3 3930 3931 . - . intron_id 8 ; splice_site "ag" KV884754.1:subseq(512622,100000) exonerate:protein2genome:local cds 3900 3929 . - . KV884754.1:subseq(512622,100000) exonerate:protein2genome:local exon 3900 3929 . - . insertions 0 ; deletions 0 KV884754.1:subseq(512622,100000) exonerate:protein2genome:local similarity 3900 95063 677 - . alignment_id 1 ; Query SELENOP ; Align 95064 5 21 ; Align 51337 13 180 ; Align 50010 74 210 ; Align 49381 145 111 ; Align 49267 182 27 ; Align 48886 191 51 ; Align 48775 208 168 ; Align 34967 265 24 ; Align 33955 273 81 ; Align 4787 301 33 ; Align 3930 312 30 # --- END OF GFF DUMP --- #