_________________________________.______________________._____________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_blast category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_____________________________________________________________________________

 Blastx evalue: 2e-27
 Query name: gi|928046123|ref|XP_013872017.1| PREDICTED: selenoprotein O [Austrofundulus limnaeus]
 Query range: 603-691  (total 691)

 Target: /data/www-rg/seblastian_results/401670042/tempfiles/temptarget.fasta
 Chromosome: KV884747.1:subseq_2435036,100000_ Strand: -
 Positions:
 -Exon 1  45091        45141
 -Exon 2  44623        44841

 Redox box: YES

Query   IAQNAIEAAENGDFSEV <---Intron---> QRVLEVLQKPFSSQPGLELPVWVGEPGTTAQAERDEGEEQQHG-ASASAARTPLPYDSKPPAWAQQI
        ||||||||||||||||| <   249bp    > ||||/||/|||||||||||| |||| |/| |||||||||||   || / || |/|||||||/|||/|
Target  IAQNAIEAAENGDFSEV                QRVLKVLEKPFSSQPGLELPAWVGEGGSTEQAERDEGEEQQQEMASTTGARNPVPYDSKPPSWAQEI
        agcagaggggaggttgg                ccgcagcgactttccgcgccgtgggggaagcggagggggcccgagtaaggaacgctgaaccttgcga
        tcaactaccaagatcat                agttattaactccacgtatccgtgagggcaacagaagaaaaaatccccgcgactcaagacccgcaat
        ccgtaagatgtcccagc                ggccgtagattttgcaggttggggatcccagaggtaaggagagggcacacatttctccgcttgcgac
                                                                                                            

Query   CVTUSS
        ||||||
Target  CVTUSS
        tgattt
        gtcgcc
        tcaatc
           *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 451 ; UGA-SECIS: 457

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884747.1:subseq_2435036,100000_ Strand = - Positions = 44171 - 44095
 Found by:  Infernal (score=21.77) Covels (score=21.96)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -8.99

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({((.--....{[[{(({(((((((..................)))))))}))}]]}......-.-.))}))))..
 target  UGGGUAGCUA--CUAAUGACGACUCAGACACCAAGUCCAACUGUGACCUGUCUGACUCUGACAAACUG-U-GGGGUGUCAU
                         ****            ^^                        ****