_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-34
 Query name: gi|908503296|ref|XP_013130818.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503300|ref|XP_013130819.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503304|ref|XP_013130820.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503308|ref|XP_013130821.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus]
 Query range: 1-158  (total 158)

 Target: /data/www-rg/seblastian_results/467425069/tempfiles/temptarget.fasta
 Chromosome: KV884744.1:subseq_2341062,100000_ Strand: -
 Positions:
 -Exon 1  52203        52298
 -Exon 2  51388        51423
 -Exon 3  51197        51231
 -Exon 4  50256        50334
 -Exon 5  49773        50000

 Redox box: YES

Query   MWLIVLASLFHCASAYDVDLKKLEGLARARVE <---Intron---> TCGGUQLNRLRE <---Intron---> VKAFVVQDIPLY <---Intron-
        |||||||||  ||||||||||||/|||/|||| <   779bp    > |||||||||||| <   156bp    > |||||||||||| <   862bp  
Target  MWLIVLASLLQCASAYDVDLKKLDGLAKARVE                TCGGUQLNRLRE                VKAFVVQDIPLY            
        atcagtgatcctgtgtgggcaacggcgagagg                atggtccaacag                gagtggcgacct            
        tgttttcgttagcccaatataatagtcacgta                cggggatagtga                tactttaatcta            
        gggcggctatgccgcccgtggagcgcaagggg                attaaggcgcag                cactgcgtttg             
                                                            *                                               

Query   --> HNLVMKHIPGADPELVLLNHYYEELD <---Intron---> RVALSDMTRSEINELLGKLGFYKKAQAEDEVPEEFRFSPAKDSPFKNEPAHQPS
          > |||||||||||||||||||||||||| <   255bp    > |/ |||||||||| ||| |||||||| |||||||||||||||||||/||| /||
Target      HNLVMKHIPGADPELVLLNHYYEELD                RIPLSDMTRSEINALLGNLGFYKKAQPEDEVPEEFRFSPAKDSPFKDEPADKPS
            cacgaacacgggcgcgccacttggtg                cacctgaactgaagccgacgttaagccggggcggtcttcgagactaggcggact
            aatttaatcgcacattttaaaaaata                gtctcatcgcatacttgatgtaaacacaaatcaatgtcccaagctaaaccaacc
           ctcggggcttgcctgtccgctttaggt                gtcgtcgcctgtctcggcgtctggtatgtggaggcccttcaccatacgaccatc
                                                                                                            

Query   SSSIATESASSEPSAEVKHTDL
        /||/|||/ ||/|/|||/||||
Target  TSSLATENTSSDPNAEVEHTDL
        attcgagaattgcaggggcagc
        ccctccaacccacacataacat
        tcttcagcacatctaacgctca
                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 294 ; UGA-SECIS: 657

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884744.1:subseq_2341062,100000_ Strand = - Positions = 49478 - 49396
 Found by:  Infernal (score=23.99) Covels (score=24.07)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -21.87

         ..(((((((..........(((((((((((((((...............))))))))))))))).............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         .((((((((..........{[[(((({(((((((.....--........)))))))}))))]]}.........-...)))))))).
 target  UACCUACUGUGAAACUGAAUGAAGCUCCAGGCUGAAAAU--CUUCUGACCGGCCUGAGGUUGAUGAGACAUGU-UUCUGGUGGGUU
                            ****           ^^^                       ****