Command line: [exonerate -m p2g --showtargetgff -q SELENOK.x.fa -t SELENOK.extraction.KV884694.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SELENOK # Protein # Selenoprotein K (SELENOK) # Zebrafish
        Target: KV884694.1:subseq(6996059,100000) Monopterus albus unplaced genomic scaffold scaffold6.1, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 337
   Query range: 0 -> 94
  Target range: 50577 -> 47587

     1 : MetValTyrValSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnVal :     9
         ||||||||||||||||||{|}            562 bp           {||}||||||
         MetValTyrValSerAsn{G}++                         ++{ly}GlnVal
 50577 : ATGGTGTACGTGTCCAAC{G}gt.........................ag{GT}CAGGTC : 49991

    10 : LeuAspSerArgSerArgSerProTrpSerLeuSerPheLeuThrAspPhePheTrpGly :    29
         ||||||||||||:!!!:!||||||||| !!||||||.!!|||..!|||.!.||||||! !
         LeuAspSerArgAlaGlnSerProTrpArgLeuSerLeuLeuValAspLeuPheTrpGlu
 49990 : CTGGACAGCAGGGCGCAGTCACCATGGCGACTGTCCCTTCTGGTCGATCTGTTCTGGGAG : 49931

    30 : AlaValGluPheIleGlyLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Phe :    38
         ||||||||||||:!!.!!|||{||}            428 bp           {|}|||
         AlaValGluPheLeuSerLeu{Ph}++                         ++{e}Phe
 49930 : GCGGTGGAGTTCCTCAGCCTG{TT}gt.........................ag{T}TTT : 49476

    39 : GlnThrLeuValGlnProAspLeuSerLysAspGlyAsnAsnSerAlaSerSerArgPhe :    58
         :!!|||:!!:!!!!.|||||||||!!!|||:!!|||   ||||||!.!|||||||||!:!
         LysThrMetIleHisProAspLeuThrLysAsnGly---AsnSerValSerSerArgTyr
 49475 : AAGACAATGATCCACCCTGACCTGACAAAGAATGGA---AACAGTGTGTCATCACGCTAC : 49419

    59 : SerAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  {y}ProProGlyPhe :    67
         ||||||||||||{||}           1718 bp           {|}|||||||||  !
         SerAspGlyArg{Gl}++                         ++{y}ProProGlyPro
 49418 : TCTGATGGCAGA{GG}gt.........................ag{T}CCTCCCGGTCCC : 47674

    68 : ProGly<->ArgArgArgMetGlyArgIleAsnHisGlyAlaGlyProThrProProPro :    86
         ||||||   ||||||||||||||||||||||||! !||||||||||||  !|||||||||
         ProGlySerArgArgArgMetGlyArgIleAsnProGlyAlaGlyProGlyProProPro
 47673 : CCTGGTAGCAGAAGGCGGATGGGAAGAATAAACCCTGGAGCGGGTCCCGGTCCGCCACCA : 47614

    87 : MetGlyGlyGlyGlyUnkGlyArg :    94
         |||||||||||||||   ||||||
         MetGlyGlyGlyGly***GlyArg
 47613 : ATgggtggaggaggatgaggaagg : 47588

vulgar: SELENOK 0 94 . KV884694.1:subseq(6996059,100000) 50577 47587 - 337 M 6 18 S 0 1 5 0 2 I 0 558 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 424 3 0 2 S 1 1 M 13 39 G 1 0 M 11 33 S 0 2 5 0 2 I 0 1714 3 0 2 S 1 1 M 6 18 G 0 3 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	gene	47588	50577	337	-	.	gene_id 1 ; sequence SELENOK ; gene_orientation +
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	cds	50559	50577	.	-	.	
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	exon	50559	50577	.	-	.	insertions 0 ; deletions 0
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	splice5	50557	50558	.	-	.	intron_id 1 ; splice_site "GT"
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	intron	49997	50558	.	-	.	intron_id 1
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	splice3	49997	49998	.	-	.	intron_id 0 ; splice_site "AG"
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	cds	49906	49996	.	-	.	
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	exon	49906	49996	.	-	.	insertions 0 ; deletions 0
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	splice5	49904	49905	.	-	.	intron_id 2 ; splice_site "GT"
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	intron	49478	49905	.	-	.	intron_id 2
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	splice3	49478	49479	.	-	.	intron_id 1 ; splice_site "AG"
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	cds	49403	49477	.	-	.	
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	exon	49403	49477	.	-	.	insertions 0 ; deletions 1
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	splice5	49401	49402	.	-	.	intron_id 3 ; splice_site "GT"
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	intron	47685	49402	.	-	.	intron_id 3
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	splice3	47685	47686	.	-	.	intron_id 2 ; splice_site "AG"
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	cds	47588	47684	.	-	.	
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	exon	47588	47684	.	-	.	insertions 3 ; deletions 0
KV884694.1:subseq(6996059,100000)	exonerate:protein2genome:local	similarity	47588	50577	337	-	.	alignment_id 1 ; Query SELENOK ; Align 50578 1 18 ; Align 49995 8 87 ; Align 49477 38 39 ; Align 49438 52 33 ; Align 47684 64 18 ; Align 47663 70 75
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis