Command line: [exonerate -m p2g --showtargetgff -q SELENOI.x.fa -t SELENOI.extraction.KV884750.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOI # Protein # Selenoprotein I (SELENOI) # Zebrafish Target: KV884750.1:subseq(2720142,100000) Monopterus albus unplaced genomic scaffold scaffold62.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1609 Query range: 0 -> 397 Target range: 54715 -> 49008 1 : TyrHisTyrValThrGlnGluGlnLeuSerGlyPheAspLysTyrLys >>>> Targe : 17 |||.!.|||||||||||||||||||||:!!|||||||||||||||||| 1 TyrGluTyrValThrGlnGluGlnLeuAlaGlyPheAspLysTyrLys++ 54715 : TACGAATATGTCACTCAGGAGCAGCTTGCGGGATTCGATAAATACAAGgt.......... : 54665 18 : t Intron 1 >>>> TyrSerAlaValAspSerAsnProLeuSerIleTyrValMetH : 31 698 bp ||||||||||||||||||||||||||||||||||||:!!|||| ++TyrSerAlaValAspSerAsnProLeuSerIleTyrIleMetH 54664 : ...............agTACAGCGCAGTGGACTCCAATCCCTTGTCAATCTATATCATGC : 52927 32 : isProPheTrpAsnSerValValLys >>>> Target Intron 2 >>>> ValLe : 41 ||||||||||||||! !||||||||| 574 bp !!|| isProPheTrpAsnPheValValLys++ ++PheLe 52926 : ACCCTTTCTGGAATTTTGTGGTGAAGgt.........................agTTTCT : 52323 42 : uProThrTrpLeuAlaProAsnLeuIleThrPheThrGlyPheMetPheLeuValLeuTh : 61 ||||||||||||||||||||||||||||||||||||||||||||||!!.||||||!!!!. uProThrTrpLeuAlaProAsnLeuIleThrPheThrGlyPheMetLeuLeuValPheAs 52322 : ACCAACATGGTTGGCTCCAAACCTCATTACATTCACAGGCTTTATGTTGCTTGTGTTCAA : 52263 62 : rPheThrMetLeuSerPhePheAspPheAspPheTyrAlaSer{G} >>>> Target : 76 !||| !||||||:!!|||||||||||||||||| ||||||{!} 28 nPheLeuMetLeuAlaPhePheAspPheAspPheThrAlaSer{A}++ 52262 : CTTTCTTATGTTGGCCTtctttgactttgacttcaCAGCTTCT{G}gt............ : 52215 77 : Intron 3 >>>> {ly}GluGlyHisThrHisValProSerTrpValTrpIleAlaAl : 90 4 bp {.!}! ! !!!. !|||||||||||||||||||||:!!||||| ++{la}AlaMetGlnGluHisValProSerTrpValTrpValAlaAl 52214 : .............ag{CT}GCAATGCAGGAACACGTGCCTAGTTGGGTCTGGGTTGCTGC : 51892 91 : aGlyLeuPheAsnPheLeuAlaTyrThrLeu{A} >>>> Target Intron 4 >>> : 101 ||||:!!||||||||||||||||||||||||{|} 1222 bp aGlyIlePheAsnPheLeuAlaTyrThrLeu{A}++ 51891 : AGGGATCTTCAACTTCTTGGCCTATACACTT{G}gt........................ : 51856 102 : > {sp}GlyValAspGlyLysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGl : 119 {||}||||||||||||||||||||||||||||||||||||||||||||||||||||| ++{sp}GlyValAspGlyLysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGl 51855 : .ag{AT}GGTGTTGATGGTAAACAGGCACGACGCACCAACTCCTCGACGCCACTGGGGGA : 50583 120 : uLeuPheAspHisGlyLeuAspSerTrpAlaCysValPhePheValAlaThrValTyrSe : 139 ||||||||||||||||||||||||||||||||||:!!||||||||||||||||||||||| uLeuPheAspHisGlyLeuAspSerTrpAlaCysLeuPhePheValAlaThrValTyrSe 50582 : GCTTTTTGACCATGGCCTGGACAGCTGGGCCTGCCTCTTCTTTGTGGCCACCGTGTACTC : 50523 140 : rValPheGlyArgGlyGluThrGlyValSerValValThrLeuTyrTyrLeuLeuTrpVa : 159 |:!!|||||||||||||||!:!||||||..!|||!.!||||||||||||:!!|||||||| rIlePheGlyArgGlyGluSerGlyValAspValAlaThrLeuTyrTyrIleLeuTrpVa 50522 : CATATTTGGGCGTGGGGAGAGTGGCGTGGACGTGGCCACCTTGTATTACATCCTGTGGGT : 50463 160 : lValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLe : 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLe 50462 : GGTGCTGTTCTCCTTCATCCTGTCTCACTGGGAGAAATATAACACTGGGATCTTGTTTCT : 50403 180 : uProTrpGlyTyrAspIleSerGlnVal >>>> Target Intron 5 >>>> Thr : 189 |||||||||||||||||||||||||||| 373 bp ||| uProTrpGlyTyrAspIleSerGlnVal++ ++Thr 50402 : GCCCTGGGGATATGACATCAGCCAAGTGgt.........................agACC : 50000 190 : IleSerIleValTyrIleIleThrAlaValValGlyValGluThrTrpTyrLysProVal : 209 :!!|||:!!|||!:!:!::!!||||||||||||||||||||||||||||||:!!|||:!! ValSerValValPheLeuValThrAlaValValGlyValGluThrTrpTyrGlnProIle 49999 : GTCTCCGTTGTTTTCTTGGTCACTGCTGTGGTTGGTGTGGAAACTTGGTACCAGCCAATC : 49940 210 : PheLeuAsnIleHisTyrArgAspLeuPheThrValMetIleIle{G} >>>> Targe : 225 ! ! !:!!:!!! !|||!:!|||||||||||| !!:!!||||||{!} ValTrpHisValLeuTyrLysAspLeuPheThrPheLeuIleIle{V}++ 49939 : GTGTGGCACGTCCTCTATAAAGACCTTTTCACTTTTCTGATCATC{G}gt.......... : 49889 226 : t Intron 6 >>>> {ly}CysLeuPheValValThrLeuProMetSerLeuTyrAsn : 238 81 bp { !}|||! !|||..!:!!|||||||||||||||||||||||| ++{al}CysSerPheThrIleThrLeuProMetSerLeuTyrAsn 49888 : ...............ag{TC}TGTTCCTTCACTATAACGTTACCCATGAGCCTCTACAAC : 49772 239 : ValPhe{Ly} >>>> Target Intron 7 >>>> {s}AlaTyrArgAsnAsnThr : 247 :!!.!.{||} 93 bp {|}|||:!!|||!:!|||||| IleLeu{Ly}++ ++{s}AlaHisArgSerAsnThr 49771 : ATCCTG{AA}gt.........................ag{G}GCCCATCGCAGTAACACT : 49652 248 : LeuLysHisSerSerLeuTyrGluAlaLeuLeuProPhePheSerProValLeuLeuPhe : 267 |||||||||||||||||||||||||||!!!|||||||||.!!|||||||||||||||||| LeuLysHisSerSerLeuTyrGluAlaPheLeuProPheLeuSerProValLeuLeuPhe 49651 : CTGAAGCATAGCAGCTTGTATGAAGCTTTCCTGCCCTTCCTCTCTCCcgtcctcctcttc : 49592 268 : ValLeuSerThrLeuTrpIleSerPheSerProThrAsnIleValGlnLysGlnProArg : 287 :::|||||||||:!!|||:!: !!:!||||||:!!||||||:!!:!! !||||||||| IleLeuSerThrIleTrpValValTyrSerProSerAsnIleLeuGluLeuGlnProArg 49591 : atcttgtCCACCATTTGGGTGGTGTATTCTCCATCCAACATCCTCGAGCTGCAACCCCGG : 49532 288 : IlePheTyrLeuMetValGlyThrAlaPheSerAsnValThr >>>> Target Intr : 302 |||||||||:!!||||||||||||||||||:!!||||||||| 108 bp IlePheTyrIleMetValGlyThrAlaPheAlaAsnValThr++ 49531 : ATCTTCTACATCATGGTGGGGACAGCGTTCGCCAATGTCACAgt................ : 49485 303 : on 8 >>>> CysLysLeuIleValCysGlnMetSerAsnThrArgCysLysProLeuS : 318 |||||||||||||||||||||||||||||||||||||||:!! !!|||! ++CysLysLeuIleValCysGlnMetSerAsnThrArgCysGlnAlaLeuA 49484 : .........agTGTAAGCTGATTGTGTGTCAGATGAGTAACACCCGCTGCCAAGCACTAA : 49331 319 : erLeuLeuLeuLeuProMetSerIleValValLeuLeuValIleSerGlyThrValGlnG : 338 :!! !|||||||||||||||||| ||||||||||||!.!:!!!!! !!..!||| snCysLeuLeuLeuProMetSerAlaValValLeuLeuAlaValThrArgValValThr- 49330 : ACTGCCTCCTACTGCCCATGTCAGCGGTGGTGTTGTTAGCTGTCACCCGGGTGGTCACC- : 49271 339 : lyGlyGluSerLeuValLeuPheIleTrpThrAlaValValLeuLeuThrHisIleHisT : 358 ...|||:::|||:::|||::!:!!|||||||||||||||:!!|||.!!|||||||||! --AsnGluThrLeuLeuLeuTyrLeuTrpThrAlaValValIleLeuAlaHisIleHisP 49270 : --AatgaaacactgctgctttATCTATGGACAGCTGTTGTCATACTAGCACACATACACT : 49214 359 : yrGlyValSerVal >>>> Target Intron 9 >>>> ValLysGlnLeuSerAs : 368 :!|||:!!|||||| 86 bp |||:!!|||||||||.. heGlyIleSerVal++ ++ValGlnGlnLeuSerSe 49213 : TTGGCATATCAGTGgt.........................agGTACAACAGCTCAGCAG : 49098 369 : pHisPheAsnIlePheAlaPheSerLeuLysLysProAsnSerAspUnkGlnAspGluGl : 388 !||||||!!.|||||||||||||||||||||||||||!:!|||||| |||!!:||||| rHisPheLysIlePheAlaPheSerLeuLysLysProSerSerAsp***GlnGluGluGl 49097 : CCACTTCAAAATCTTTGCCTTCTCTCTGAAGAAGCCCAGCAGTGACTGACAGGAGGAGGA : 49038 389 : uLysIleGlyLeuLysAlaAlaGluVal : 397 |:!!||||||||||||!.!||||||||| uGlnIleGlyLeuLysGlyAlaGluVal 49037 : ACAAATTGGCTTGAAAGGAGCTGAGGTT : 49009 vulgar: SELENOI 0 397 . KV884750.1:subseq(2720142,100000) 54715 49008 - 1609 M 16 48 5 0 2 I 0 1694 3 0 2 M 23 69 5 0 2 I 0 570 3 0 2 M 36 108 S 0 1 5 0 2 I 0 280 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 1218 3 0 2 S 1 2 M 87 261 5 0 2 I 0 369 3 0 2 M 36 108 S 0 1 5 0 2 I 0 77 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 89 3 0 2 S 1 1 M 60 180 5 0 2 I 0 104 3 0 2 M 36 108 G 1 0 M 24 72 5 0 2 I 0 82 3 0 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-23 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local gene 49009 54715 1609 - . gene_id 1 ; sequence SELENOI ; gene_orientation + KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 54668 54715 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 54668 54715 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 54666 54667 . - . intron_id 1 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 52970 54667 . - . intron_id 1 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 52970 52971 . - . intron_id 0 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 52901 52969 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 52901 52969 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 52899 52900 . - . intron_id 2 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 52327 52900 . - . intron_id 2 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 52327 52328 . - . intron_id 1 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 52218 52326 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 52218 52326 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 52216 52217 . - . intron_id 3 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 51934 52217 . - . intron_id 3 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 51934 51935 . - . intron_id 2 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 51859 51933 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 51859 51933 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 51857 51858 . - . intron_id 4 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 50637 51858 . - . intron_id 4 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 50637 50638 . - . intron_id 3 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 50374 50636 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 50374 50636 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 50372 50373 . - . intron_id 5 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 50001 50373 . - . intron_id 5 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 50001 50002 . - . intron_id 4 ; splice_site "ag" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 49892 50000 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 49892 50000 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 49890 49891 . - . intron_id 6 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 49811 49891 . - . intron_id 6 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 49811 49812 . - . intron_id 5 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 49762 49810 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 49762 49810 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 49760 49761 . - . intron_id 7 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 49669 49761 . - . intron_id 7 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 49669 49670 . - . intron_id 6 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 49488 49668 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 49488 49668 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 49486 49487 . - . intron_id 8 ; splice_site "GT" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 49380 49487 . - . intron_id 8 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 49380 49381 . - . intron_id 7 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 49200 49379 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 49200 49379 . - . insertions 0 ; deletions 1 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice5 49198 49199 . - . intron_id 9 ; splice_site "gt" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local intron 49114 49199 . - . intron_id 9 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local splice3 49114 49115 . - . intron_id 8 ; splice_site "AG" KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local cds 49009 49113 . - . KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local exon 49009 49113 . - . insertions 0 ; deletions 0 KV884750.1:subseq(2720142,100000) exonerate:protein2genome:local similarity 49009 54715 1609 - . alignment_id 1 ; Query SELENOI ; Align 54716 1 48 ; Align 52970 17 69 ; Align 52327 40 108 ; Align 51932 77 72 ; Align 50635 102 261 ; Align 50001 189 108 ; Align 49809 226 45 ; Align 49668 242 180 ; Align 49380 302 108 ; Align 49272 339 72 ; Align 49114 363 105 # --- END OF GFF DUMP --- # -- completed exonerate analysis