_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-32
 Query name: gi|941804660|ref|XP_005809852.2| PREDICTED: selenoprotein H [Xiphophorus maculatus]
 Query range: 6-126  (total 126)

 Target: /data/www-rg/seblastian_results/382832466/tempfiles/temptarget.fasta
 Chromosome: KV884690.1:subseq_8011980,100000_ Strand: -
 Positions:
 -Exon 1  50977        51089
 -Exon 2  50106        50248
 -Exon 3  49905        50008

 Redox box: YES

Query   GRRGTKRKAGEVQTFTEEKKEKGEEESGQNGVKVVIEHC <---Intron---> KSURVYGRNAEEVKSALLAARPGLTVVLNPEKPRRNSFEITLLDG
        ||||||||| | /   |||/// | |/|| | /|||||| <   728bp    > |||||||||||||||||||| ||||||/|||||||||||||||||
Target  GRRGTKRKAEEEKPSMEEKRDR-EGENGQQGQRVVIEHC                KSURVYGRNAEEVKSALLAAIPGLTVVVNPEKPRRNSFEITLLDG
        gccgaacaggggactaggaaga-gggagccgcaggagct                aatcgtgcaggggatgccggacgcagggacgacccaatgaaccgg
        ggggcagacaaaacctaaagag-agaagaagagtttaag                agggtaggacaataccttcctcgtctttacaacggagtatcttag
        ttagagcaagggaacgggagca-aggcaaacaggccac                tgcaagtgtttgggatccgtcctagtgccctaaacgcctgctggta
                                                                 *                                          

Query   GKE <---Intron---> TSLWTGIKKGPPRKLKFPQPDSVVAALQEALKTE
        ||| <    97bp    > | ||||||||||||||||||| |||||||||| |
Target  GKE                TPLWTGIKKGPPRKLKFPQPDVVVAALQEALKAE
        gag                acttagaaagcccacatcccggggggccggcagg
        ga                acctgcgtaagccgatatcacatttcctaactaca
        ca                gatggtaaggtattgggttgactatttgggtgatg
                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1002 ; UGA-SECIS: 1239

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884690.1:subseq_8011980,100000_ Strand = - Positions = 48902 - 48828
 Found by:  Infernal (score=24.22) Covels (score=31.54)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -17.09

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((([(((((--....{[[{(((((({(((......-..........)))}))))))}]]}.....-..)))))]))))
 target  CUGUGGAAAC--AGAAUGAUGAGGAGUGACCAAGGA-GAUGUUCUCAGUCCCUCUUCUGAUGAUCC-AAGUUUCAACAG
                         ****           ^^                        ****