Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q treball/run/SELENOH/SELENOH.x.fa -t treball/run/SELENOH/SELENOH.extraction.KV884690.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SELENOH # Protein # Selenoprotein H (SELENOH) # Zebrafish
        Target: KV884690.1:subseq(8011980,100000) Monopterus albus unplaced genomic scaffold scaffold2.1, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 295
   Query range: 5 -> 127
  Target range: 59163 -> 49904

     6 : LysSerAlaArgLysArgLysAlaAspSerAsp{G}  >>>> Target Intron 1 > :    17
         ||||||  !|||||||||  !  !:!!!!!|||{|}           8068 bp      
         LysSerArgArgLysArgTrpIleAsnThrAsp{G}++                      
 59163 : AAGAGTAGGAGAAAGAGATGGATTAACACAGAT{G}gt...................... : 59127

    18 : >>>  {lu}LysGluLysLeuAspAspAlaLysLysGluLysLeuGluAspLysAspGlu :    34
              {||}:::||||||   ..!   ! !:!!|||..! !   !|||!  :!!:!!! !
            ++{lu}GluGluLysProSerMetGluGluLysArgAspArgGluGlyGluAsnGly
 59126 : ...ag{ag}gaggagaaaccaTCCATGGAGGAGAAAAGGGACAGAGAAGGGGAGAACGGA : 51011

    35 : GluThrGlyLeuArgValValIleGluHis{Cy}  >>>> Target Intron 2 >>> :    45
         :!!  !|||! !||||||||||||||||||{||}            728 bp        
         GlnGlnGlyGlnArgValValIleGluHis{Cy}++                        
 51010 : CAACAAGGCCAAAGGGTGGTCATCGAACAC{TG}gt........................ : 50974

    46 : >  {s}LysSerUnkArgValTyrGlyArgAsnAlaValValValArgGluAlaLeuAla :    63
            {|}||||||   |||||||||||||||||||||! !! !|||!:!...||||||  !
          ++{s}LysSer***ArgValTyrGlyArgAsnAlaGluGluValLysSerAlaLeuLeu
 50973 : .ag{T}AAGAGCTGACGAGTGTATGGGCGTAATGCTGAGGAGGTGAAATCTGCCCTCCTG : 50196

    64 : AspSerHisProGluLeuLysValMetIleAsnProHisAsnProArgArgAsnSerPhe :    83
         ! !:!!  !|||! !|||!  |||:!::!!||||||.!.!!.||||||||||||||||||
         AlaAlaIleProGlyLeuThrValValValAsnProGluLysProArgArgAsnSerPhe
 50195 : GCTGCCATCCCTGGACTGACTGTGGTCGTCAACCCTGAAAAACCACGCCGGAACAGCTTT : 50136

    84 : GluIleThrLeuMetAspGlyGluArg{A}  >>>> Target Intron 3 >>>>  { :    93
         ||||||||||||:!!||||||!  !:!{!}            97 bp            {
         GluIleThrLeuLeuAspGlyGlyLys{G}++                         ++{
 50135 : GAGATCACTCTGCTGGATGGAGGCAAA{G}gt.........................ag{ : 50008

    94 : la}AspValLeuTrpSerGlyIleLysLysGlyProProArgLysLeuLysPheProGlu :   112
          !}     !||||||!!!|||||||||||||||||||||||||||||||||||||||:!!
         lu}ThrProLeuTrpThrGlyIleLysLysGlyProProArgLysLeuLysPheProGln
 50007 : AG}ACACCTTTGTGGACTGGAATAAAGAAGGGTCCACCTCGTAAGCTGAAGTTTCCTCAG : 49952

   113 : ProAlaGluValValThrAlaLeuLysGlnAlaLeuGluLysGlu :   127
         |||! !!  ||||||.!!||||||:!!:!!||||||:!!   |||
         ProAspValValValAlaAlaLeuGlnGluAlaLeuLysAlaGlu
 49951 : CCAGACGTTGTAGTTGCTGCTCTGCAGGAGGCTCTGAAAGCTGAG : 49905

vulgar: SELENOH 5 127 . KV884690.1:subseq(8011980,100000) 59163 49904 - 295 M 11 33 S 0 1 5 0 2 I 0 8064 3 0 2 S 1 2 M 27 81 S 0 2 5 0 2 I 0 724 3 0 2 S 1 1 M 47 141 S 0 1 5 0 2 I 0 93 3 0 2 S 1 2 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-12-01
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	gene	49905	59163	295	-	.	gene_id 1 ; sequence SELENOH ; gene_orientation +
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	cds	59130	59163	.	-	.	
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	exon	59130	59163	.	-	.	insertions 0 ; deletions 0
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	splice5	59128	59129	.	-	.	intron_id 1 ; splice_site "Gt"
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	intron	51062	59129	.	-	.	intron_id 1
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	splice3	51062	51063	.	-	.	intron_id 0 ; splice_site "ag"
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	cds	50977	51061	.	-	.	
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	exon	50977	51061	.	-	.	insertions 0 ; deletions 0
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	splice5	50975	50976	.	-	.	intron_id 2 ; splice_site "GT"
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	intron	50249	50976	.	-	.	intron_id 2
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	splice3	50249	50250	.	-	.	intron_id 1 ; splice_site "AG"
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	cds	50106	50248	.	-	.	
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	exon	50106	50248	.	-	.	insertions 0 ; deletions 0
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	splice5	50104	50105	.	-	.	intron_id 3 ; splice_site "GT"
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	intron	50009	50105	.	-	.	intron_id 3
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	splice3	50009	50010	.	-	.	intron_id 2 ; splice_site "AG"
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	cds	49905	50008	.	-	.	
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	exon	49905	50008	.	-	.	insertions 0 ; deletions 0
KV884690.1:subseq(8011980,100000)	exonerate:protein2genome:local	similarity	49905	59163	295	-	.	alignment_id 1 ; Query SELENOH ; Align 59164 6 33 ; Align 51060 18 81 ; Align 50248 46 141 ; Align 50007 94 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis