Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/SELENOE.x.fa -t SELENOE.extraction.KV884725.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOE # Protein # Fish selenoprotein 15 (SELENOE) # Zebrafish Target: KV884725.1:subseq(1272495,100000) Monopterus albus unplaced genomic scaffold scaffold37.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 482 Query range: 2 -> 138 Target range: 72805 -> 49877 3 : LeuThrLeuValAlaLeuLeuAlaLeuCysAlaThrGlyArg{Th} >>>> Target : 17 :!!|||:!!:!! ! !!!! !||||||||||||||| !{! } 211 MetThrValIleMetAlaPheArgLeuCysAlaThrGlyVal{Ar}++ 72805 : ATGACTGTAATCATGGCATTCCGTCTGTGTGCCACAGGTGTG{AG}gt............ : 72759 18 : Intron 1 >>>> {r}AlaGluAsnLeuSerGluSerThrThrAspGlnAspLysLeu : 31 63 bp {!}|||..!.!. !!:!.!.:!!|||.!!! !:!!! ! !||| ++{g}AlaSerGluThrAsnAsnAlaThrAlaAlaGluGlyThrLeu 72758 : .............ag{G}GCGTCAGAAACAAACAACGCCACAGCTGCTGAAGGAACGCTT : 51558 32 : ValIleAlaArgGlyLysLeuVal >>>> Target Intron 2 >>>> AlaProS : 42 |||||||||||||||||||||:!! 334 bp ||||||| ValIleAlaArgGlyLysLeuLeu++ ++AlaProS 51557 : GTTATAGCCAGAGGTAAACTGCTGgt.........................agGCTCCCA : 51191 43 : erValValGlyUnkSerIleLysLysMetProGluLeuTyrAsnPheLeuMetGluArgT : 62 ||||||||||| .!!|||||||||||||||||||||:!!.!.|||||||||||||||| erValValGly***GlyIleLysLysMetProGluLeuHisGlnPheLeuMetGluArgT 51190 : GTGTGGTCGGGTGAGGCATAAAGAAAATGCCTGAGCTCCATCAGTTTCTCATGGAGCGGT : 51131 63 : rpAlaLeu{Ty} >>>> Target Intron 3 >>>> {r}HisAsnLeuGluTyrA : 71 ||||||||{||} 274 bp {|}|||||||||||||||| rpAlaLeu{Ty}++ ++{r}HisAsnLeuGluTyrA 51130 : GGGCTTTG{TA}gt.........................ag{C}CACAACCTGGAATATG : 50830 72 : spSerGlyGluAspLysAsnProArgLeuIlePheTyrAsnAspLysAspGluGluValL : 91 |||||..!|||.!.|||||||||||||||||||||||||||!!:|||||||||! |||| spSerSerGluGlnLysAsnProArgLeuIlePheTyrAsnGluLysAspGluValValL 50829 : ATTCATCGGAGCAGAAGAATCCCCGTCTGATATTCTATAATGAAAAGGACGAGGTTGTAA : 50770 92 : ys >>>> Target Intron 4 >>>> ValValProValLysLysMetLysAlaAs : 101 || 749 bp ..!|||||||||||||||||||||||||| ys++ ++ThrValProValLysLysMetLysAlaAs 50769 : AGgt.........................agACTGTTCCCGTGAAGAAAATGAAGGCAGA : 49991 102 : pGluIleSerSerLeuLeuAspSerLeuGlyPheTyrLysArgSerGluLysGlyGluGl : 121 ||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||| pGluIleSerSerLeuLeuAspSerLeuGlyPheTyrLysArgSerGlnLysGlyGluGl 49990 : CGAGATCAGCAGCCTGTTAGACTCACTCGGTTTCTACAAGAGGTCCCAAAAAGGGGAAGA : 49931 122 : uValProGluGluPheLysHisPheProLeuArgAlaProArgAspGluLeu : 138 ||||||||||||||||:!!||||||||||||!.!|||||||||||||||||| uValProGluGluPheGlnHisPheProLeuHisAlaProArgAspGluLeu 49930 : GGTGCCAGAGGAGTTCCAGCATTTCCCCCTGCATGCCCCCAGGGATGAGCTG : 49878 vulgar: SELENOE 2 138 . KV884725.1:subseq(1272495,100000) 72805 49877 - 482 M 14 42 S 0 2 5 0 2 I 0 21159 3 0 2 S 1 1 M 22 66 5 0 2 I 0 330 3 0 2 M 25 75 S 0 2 5 0 2 I 0 270 3 0 2 S 1 1 M 26 78 5 0 2 I 0 745 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local gene 49878 72805 482 - . gene_id 1 ; sequence SELENOE ; gene_orientation + KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local cds 72762 72805 . - . KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local exon 72762 72805 . - . insertions 0 ; deletions 0 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice5 72760 72761 . - . intron_id 1 ; splice_site "GT" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local intron 51599 72761 . - . intron_id 1 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice3 51599 51600 . - . intron_id 0 ; splice_site "AG" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local cds 51532 51598 . - . KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local exon 51532 51598 . - . insertions 0 ; deletions 0 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice5 51530 51531 . - . intron_id 2 ; splice_site "GT" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local intron 51198 51531 . - . intron_id 2 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice3 51198 51199 . - . intron_id 1 ; splice_site "AG" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local cds 51121 51197 . - . KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local exon 51121 51197 . - . insertions 0 ; deletions 0 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice5 51119 51120 . - . intron_id 3 ; splice_site "GT" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local intron 50847 51120 . - . intron_id 3 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice3 50847 50848 . - . intron_id 2 ; splice_site "AG" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local cds 50768 50846 . - . KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local exon 50768 50846 . - . insertions 0 ; deletions 0 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice5 50766 50767 . - . intron_id 4 ; splice_site "GT" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local intron 50019 50767 . - . intron_id 4 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local splice3 50019 50020 . - . intron_id 3 ; splice_site "AG" KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local cds 49878 50018 . - . KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local exon 49878 50018 . - . insertions 0 ; deletions 0 KV884725.1:subseq(1272495,100000) exonerate:protein2genome:local similarity 49878 72805 482 - . alignment_id 1 ; Query SELENOE ; Align 72806 3 42 ; Align 51598 18 66 ; Align 51198 40 75 ; Align 50846 66 78 ; Align 50019 92 141 # --- END OF GFF DUMP --- # -- completed exonerate analysis