Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q treball/run/SBP2a/SBP2a.x.fa -t treball/run/SBP2a/SBP2a.extraction.KV884725.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SBP2a Protein # SECIS binding protein 2 (SBP2) # Zebrafish Target: KV884725.1:subseq(714423,100000) Monopterus albus unplaced genomic scaffold scaffold37.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 1063 Query range: 0 -> 361 Target range: 47762 -> 98059 1 : SerGlnGlnThrSerGlnLysLysSerLysValProValGlnLeuAspLeuGlyAsnMet : 20 :!!:!!:!!..!||| !||||||||||||!.!|||||||||||||||:!!||||||!!: AlaGluLysValSerGlyLysLysSerLysAlaProValGlnLeuAspIleGlyAsnIle 47763 : GCTGAAAAGGTCTCGGGGAAGAAGAGCAAAGCTCCTGTTCAGCTGGATATAGGAAATATA : 47820 21 : LeuAlaPheLeuGluGlnLysGlnGlnSerGlnLysSerLysGlnAspGlnArgProVal : 40 |||||| !||||||:!!||||||!!. !!|||||| !!||||||||| !:!|||||| LeuAlaAlaLeuGluLysLysGlnHisProGlnLysProLysGlnAspAlaLysProVal 47821 : TTGGCTGCCCTGGAAAAGAAGCAACACCCGCAAAAACCCAAGCAGGATGCCAAGCCAGTC : 47880 41 : ThrLeuThr{V} >>>> Target Intron 1 >>>> {al}GlyGlyAlaLeuPro : 49 ! !|||:!!{|} 202 bp {||}||||||!.!|||||| IleLeuSer{V}++ ++{al}GlyGlyGlyLeuPro 47881 : ATTCTCTCA{G}gt.........................ag{TT}GGTGGAGGACTACCT : 48109 50 : ValValHisLysGluProSerValGlnLysLys<->GlnTrpGlnGlnGluLysThrPro : 68 :!!|||!!.|||:!! !! !:!!||||||||| ! ||||||:!!!!:|||! ! !! IleValGlnLysGlnValPheIleGlnLysLysProProTrpGlnLysAspLysIleAla 48110 : ATTGTCCAGAAGCAAGTGTTCATCCAAAAGAAGCCACCTTGGCAGAAGGATAAAATTGCA : 48169 69 : HisAsnProLeuAspSerThrCysProSerValLysLysGlyLysGlnArgGluValPro : 88 ||||||||||||||||||||| !!|||! !|||||||||||||||||||||||||||||| HisAsnProLeuAspSerThrSerProLeuValLysLysGlyLysGlnArgGluValPro 48170 : CACAATCCCCTGGACTCCACCAGCCCTTTGgtgaagaaaggaaaacaaagagaggTACCC : 48229 89 : LysAlaLysLysProThrProLeuLysArg >>>> Target Intron 2 >>>> V : 99 |||||||||||||||||||||||||||!:! 81 bp | LysAlaLysLysProThrProLeuLysLys++ ++V 48230 : AAAGCCAAGAAACCCACTCCTCTCAAGAAGgt.........................agG : 48343 100 : alIleLeuArgGluArgGluGluArgLysGlnAsnArgLeuLeuGluGluArg{A} >> : 117 ||||||||!::|||||||||||||||||||||...||||||||||||||||||{!} alIleLeuLysGluArgGluGluArgLysGlnArgArgLeuLeuGluGluArg{G}++ 48344 : TCATTTTGAaagaaagggaggagagaaaacagagacgTTTGCTGGAGGAGAGA{G}gt.. : 48400 118 : >> Target Intron 3 >>>> {sp}ProSerArgValAlaThrGluAlaGlyGluL : 128 146 bp { !} !! ! !! !||| !||| !..!!!: ++{ly}AspIle***CysAlaPheGluIleSerAsp- 48401 : .......................ag{GT}GATATTTGATGTGCTTTTGAAATCTCAGAT- : 48576 129 : ysGluThrAsnAspAsnAlaGluAspIleGlyValLysAspSerGluIleGluGlnProA : 148 !!:! !.!...! !.!!|||!!::!!! ! ! .!.||||||.!!.!. !! --AspIleGluSerProThrGluGluLeuAsp---AspGlnSerGluPheAsnGlyThrA 48577 : --GACATTGAAAGTCCTACTGAAGAACTCGAT---GATCAGTCTGAGTTTAATGGCACAA : 48630 149 : laSerProSerAspAspLysLeuAspAspGlyLeuSerGluAsnProThrLeuGlnThrG : 168 !..! ! ! ! .!.:!! !!!: !! ! !..!|||! ! !|||! !|||||| snGlnMetValLysGlnGluGluGluThrAspThrAspGluIleValThrGlnGlnThrT 48631 : ATCAGATGGTGAAACAAGAGGAGGAGACTGACACAGACGAGATTGTAACACAGCAAACCA : 48690 169 : luIleProAsnSerAsnProIleSerLysValProLysIleHisSerArgLysPheArg{ : 188 !||| ||| ! !!:!!||| ! |||||||||||||||||||||||||||{ hrSerProValSerCysAlaValSerHis---ProLysIleHisSerArgLysPheArg{ 48691 : CTTCACCTGTGTCCTGTGCCGTCAGTCAT---CCCAAAATCCACAGCAGAAAATTCAGA{ : 48747 189 : As} >>>> Target Intron 4 >>>> {p}TyrCysAsnGlnValLeuSerLysA : 197 ||} 183 bp {|}||||||!:!|||:!!||||||!:!| As}++ ++{p}TyrCysSerGlnMetLeuSerArgA 48748 : GA}gt.........................ag{C}TATTGTAGCCAGATGCTGAGCAGAG : 48957 198 : spValAspGluCysValSerAsnLeuLeuLysGluLeuValArgPheGlnAspArgLeuT : 217 ||||||||:!!||||||!!! !||||||||||||||||||||||||||||||||||||| spValAspGlnCysValThrAlaLeuLeuLysGluLeuValArgPheGlnAspArgLeuT 48958 : ATGTGGACCAGTGTGTGACGGCTCTGCTAAAGGAGCTGGTTCGTTTCCAGGACCGCCTGT : 49017 218 : yrGlnLysAspProMetLysAlaArgMetLysArgArgLeuValMetGlyLeuArgGluV : 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrGlnLysAspProMetLysAlaArgMetLysArgArgLeuValMetGlyLeuArgGluV 49018 : ACCAGAAGGACCCAATGAAGGCCCGCATGAAGAGACGGCTGGTAATGGGGCTGAGAGAGG : 49077 238 : alLeuLysHisLeuLysLeuLysLysValLysCysValIleIleSerProAsnCysGluA : 257 ||||||||||||||||||||!:!||||||||||||||||||||||||||||||||||||| alLeuLysHisLeuLysLeuArgLysValLysCysValIleIleSerProAsnCysGluA 49078 : TCCTGAAGCACCTAAAACTCAGGAAGGTCAAGTGTGTCATCATCTCACCCAACTGTGAAC : 49137 258 : rgIleGlnSerLys{G} >>>> Target Intron 5 >>>> {ly}GlyLeuAspG : 266 ||||||||||||||{|} 848 bp {||}|||||||||| rgIleGlnSerLys{G}++ ++{ly}GlyLeuAspG 49138 : GAATCCAATCCAAA{G}gt.........................ag{GT}GGCCTGGATG : 50012 267 : luAlaLeuHisAsnIleIleAspThrCysArgAspGlnSerValProPheValPheAlaL : 286 |||||||||||!.!||||||||||||||||||!!:|||.!!||||||||||||||||||| luAlaLeuHisThrIleIleAspThrCysArgGluGlnGlyValProPheValPheAlaL 50013 : AGGCTCTCCACACCATCATTGACACGTGTCGGGAACAGGGGGTGCCTTTCGTGTTTGCCC : 50072 287 : euSerArgLysAlaLeuGlyArgCysValAsnLysAlaValProValSerLeuValGlyI : 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euSerArgLysAlaLeuGlyArgCysValAsnLysAlaValProValSerLeuValGlyI 50073 : TCTCCAGGAAAGCTTTGGGCCGCTGCGTCAACAAGGCAGTGCCTGTCAGTCTGGTGGGCA : 50132 307 : lePheAsnTyrAspGlyAlaGln >>>> Target Intron 6 >>>> AspHisTy : 316 ||||||||||||||||||||||| 147 bp |||:!!|| lePheAsnTyrAspGlyAlaGln++ ++AspTyrTy 50133 : TCTTCAACTATGATGGTGCACAGgt.........................agGACTACTA : 50309 317 : rHisLysMetIleGluLeuSerAlaGluAlaArgLysSerTyrGluValMetIleAlaAs : 336 ||||||||||||||||||||||:!!|||||||||! !:!!||||||||||||:!:.!!!: rHisLysMetIleGluLeuSerSerGluAlaArgThrAlaTyrGluValMetValThrSe 50310 : TCATAAGATGATTGAGTTGTCGTCTGAGGCCAGGACAGCCTATGAGGTCATGGTGACGAG : 50369 337 : nLeuAspGluGluGlyGluGlyArg >>>> Target Intron 7 >>>> LeuSer : 346 !|||!!::!! !! !:!!! !!:! 47613 bp :!!||| rLeuGluGlnProAspGlnAspGln+- ++ValSer 50370 : CTTGGAGCAGCCGGACCAGGACCAGgc.........................agGTGAGT : 98012 347 : LeuLeuAlaLeuTyrArgArgThrGlyProIleLysCysThrCys : 361 ! !:!!.!! ! !! !|||!.!||||||! !! |||:!!||| ProValThrArgLeuLeuArgAsnGlyProThrThrCysSerCys 98013 : CCAGTCACCAGGCTCCTCAGAAACGGTCCGACCACCTGCTCCTGT : 98059 vulgar: SBP2a 0 361 . KV884725.1:subseq(714423,100000) 47762 98059 + 1063 M 43 129 S 0 1 5 0 2 I 0 198 3 0 2 S 1 2 M 16 48 G 0 3 M 38 114 5 0 2 I 0 77 3 0 2 M 18 54 S 0 1 5 0 2 I 0 142 3 0 2 S 1 2 M 10 30 G 1 0 M 10 30 G 1 0 M 38 114 G 1 0 M 9 27 S 0 2 5 0 2 I 0 179 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 844 3 0 2 S 1 2 M 51 153 5 0 2 I 0 143 3 0 2 M 31 93 5 0 2 I 0 47609 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-01 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884725.1:subseq(714423,100000) exonerate:protein2genome:local gene 47763 98059 1063 + . gene_id 1 ; sequence SBP2a ; gene_orientation + KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 47763 47892 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 47763 47892 . + . insertions 0 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 47893 47894 . + . intron_id 1 ; splice_site "GT" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 47893 48094 . + . intron_id 1 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 48093 48094 . + . intron_id 0 ; splice_site "AG" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 48095 48261 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 48095 48261 . + . insertions 3 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 48262 48263 . + . intron_id 2 ; splice_site "GT" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 48262 48342 . + . intron_id 2 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 48341 48342 . + . intron_id 1 ; splice_site "AG" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 48343 48397 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 48343 48397 . + . insertions 0 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 48398 48399 . + . intron_id 3 ; splice_site "GT" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 48398 48543 . + . intron_id 3 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 48542 48543 . + . intron_id 2 ; splice_site "AG" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 48544 48748 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 48544 48748 . + . insertions 0 ; deletions 3 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 48749 48750 . + . intron_id 4 ; splice_site "GT" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 48749 48931 . + . intron_id 4 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 48930 48931 . + . intron_id 3 ; splice_site "AG" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 48932 49152 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 48932 49152 . + . insertions 0 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 49153 49154 . + . intron_id 5 ; splice_site "gt" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 49153 50000 . + . intron_id 5 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 49999 50000 . + . intron_id 4 ; splice_site "AG" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 50001 50155 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 50001 50155 . + . insertions 0 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 50156 50157 . + . intron_id 6 ; splice_site "GT" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 50156 50302 . + . intron_id 6 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 50301 50302 . + . intron_id 5 ; splice_site "ag" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 50303 50395 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 50303 50395 . + . insertions 0 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice5 50396 50397 . + . intron_id 7 ; splice_site "GC" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local intron 50396 98008 . + . intron_id 7 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local splice3 98007 98008 . + . intron_id 6 ; splice_site "AG" KV884725.1:subseq(714423,100000) exonerate:protein2genome:local cds 98009 98059 . + . KV884725.1:subseq(714423,100000) exonerate:protein2genome:local exon 98009 98059 . + . insertions 0 ; deletions 0 KV884725.1:subseq(714423,100000) exonerate:protein2genome:local similarity 47763 98059 1063 + . alignment_id 1 ; Query SBP2a ; Align 47763 1 129 ; Align 48097 45 48 ; Align 48148 61 114 ; Align 48343 99 54 ; Align 48546 118 30 ; Align 48576 129 30 ; Align 48606 140 114 ; Align 48720 179 27 ; Align 48933 189 219 ; Align 50003 263 153 ; Align 50303 314 93 ; Align 98009 345 51 # --- END OF GFF DUMP --- # -- completed exonerate analysis