Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/PSTK.x.fa -t PSTK.extraction.KV884757.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: PSTK  Protein # Phosphoseryl-tRNA kinase  (PSTK) # Zebrafish
        Target: KV884757.1:subseq(3259506,100000) Monopterus albus unplaced genomic scaffold scaffold69.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 303
   Query range: 11 -> 192
  Target range: 49321 -> 50469

    12 : AlaCysLeuCysLeuLeuPheGlyLeuProAlaAlaGlyLysSerArgLeuAlaGluGln :    31
         ||||||||||||:!!|||! !||||||||||||||||||||||||  !||||||     !
         AlaCysLeuCysValLeuCysGlyLeuProAlaAlaGlyLysSerSerLeuAlaLeuAla
 49322 : GCTTGTCTGTGTGTCCTGTGCGGGTTACCTGCCGCTGGGAAGTCCTCTCTGGCCCTCGCG : 49379

    32 : LeuArgGlyHisAlaHisSerArgGlyTrpArgThrLeuThrValThrTyrAspLeuLeu :    51
         :!!! !..!  !|||   ..!!.!|||||||||.!!  !..!||| !!||||||  !|||
         ValLeuAsnAlaAlaAlaGlnHisGlyTrpArgAlaThrValValProTyrAspAspLeu
 49380 : GTTCTGAACGCCGCTGCACAGCACGGCTGGAGAGCTACTGTGGTACCGTACGATGACCTG : 49439

    52 : IleProGluArgAspTrpArgGlnAla{G}  >>>> Target Intron 1 >>>>  { :    61
         |||||||||!.!! !!::!.!     !{|}            531 bp           {
         IleProGluHisAlaPheHisThrArg{G}--                         -+{
 49440 : ATCCCCGAGCATGCTTTCCATACTAGA{G}tg.........................tg{ : 50001

    62 : lu}TrpLysGlnHisArgLysThrValLeuAlaCysLeuGluArgPheLeuGlnHisSer :    80
         ||}||||||..!||||||:!!.!!||||||  !|||:!!|||!:!||||||         
         lu}TrpLysSerHisArgGlnAlaValLeuGlnCysIleGluGlnPheLeu---------
 50002 : AG}TGGAAGTCACACAGACAGGCAGTGTTGCAGTGCATTGAGCAGTTCTTG--------- : 50051

    81 : LeuSerGluGlnThrHisThrLeuProGluThrHisThrLeuCysGluGlnAlaAspAla :   100
               :!!:!! !!.!...!|||  !|||  !!  !:!  !|||:!!     !..!|||
         ------LysLysProGluValLeuValGluLeuProSerSerCysGlnIleAsnSerAla
 50052 : ------AAGAAGCCTGAAGTGTTGGTAGAGCTGCCGAGTAGCTGTCAGATTAACAGTGCT : 50102

   101 : GlyValTrpMetArgPheGluGlnLeuLeuArgAspGlnSerValPheLeuSerHisThr :   120
         ! !  !  !..! !!  !:!!   ||||||!:!  !:!!:!!:!!  !! !|||   .!!
         ValTrpLysGlnCysThrGlnAlaLeuLeuGlnProGluAlaLeuAspArgSerTrpAla
 50103 : GTATGGAAGCAGTGCACTCAAGCTCTGCTACAGCCTGAAGCTTTGGACCGCTCTTGGGCT : 50162

   121 : HisSerGlnProLeuValLeuLeuLeuAspAspAsnPheTyrTyrGlnSerMetArgGln :   140
          !! !!  ! !!!!!:!!!!!||||||||||||||||||||||||! !||||||||| ! 
         AspArgAlaAlaPheLeuPheLeuLeuAspAspAsnPheTyrTyrProSerMetArgTyr
 50163 : GACCGGGCAGCATTTCTCTTTTTACTGGATGACAACTTCTACTATCCAAGCATGAGATAT : 50222

   141 : GlnIleGlnGlnLeuAlaArgArg{S}  >>>> Target Intron 2 >>>>  {er} :   149
         :!!:!! ! ||||||||||||!:!{!}            89 bp            { !}
         GluValTyrGlnLeuAlaArgLys{T}++                         ++{yr}
 50223 : GAAGTATACCAACTTGCAAGAAAG{T}gt.........................ag{AT} : 50339

   150 : ThrCysGlyPheCysGlnValPheLeuGlnCysSerLeuGlyValCysValGlnArgAsn :   169
         :!!   |||||||||||||||  !|||||||||..!|||! !  !|||:!!...||||||
         SerLeuGlyPheCysGlnValHisLeuGlnCysAspLeuGluSerCysIleSerArgAsn
 50340 : TCTCTGGGGTTCTGCCAGGTGCATCTGCAGTGTGATTTGGAGTCCTGCATCAGTAGAAAC : 50398

   170 : ArgLeuArgValArgProLeuProAspAlaValLeuLeuGlnMetSerGluArgLeuGlu :   189
         !:!  !|||! !!:!|||:!!|||  !! !|||:!!|||:!!|||  !:!!|||||||||
         GlnSerArgAspLysProIleProThrGluValIleLeuGluMetValLysArgLeuGlu
 50399 : CAAAGCAGGGACAAACCCATTCCCACTGAGGTTATACTGGAGATGGTGAAGCGTTTGGAG : 50458

   190 : ProProAsp :   192
         ||||||:!!
         ProProAsn
 50459 : CCTCCCAAT : 50469

vulgar: PSTK 11 192 . KV884757.1:subseq(3259506,100000) 49321 50469 + 303 M 49 147 S 0 1 5 0 2 I 0 527 3 0 2 S 1 2 M 16 48 G 5 0 M 66 198 S 0 1 5 0 2 I 0 85 3 0 2 S 1 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	gene	49322	50469	303	+	.	gene_id 1 ; sequence PSTK ; gene_orientation +
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	cds	49322	49469	.	+	.	
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	exon	49322	49469	.	+	.	insertions 0 ; deletions 0
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	splice5	49470	49471	.	+	.	intron_id 1 ; splice_site "TG"
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	intron	49470	50000	.	+	.	intron_id 1
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	splice3	49999	50000	.	+	.	intron_id 0 ; splice_site "TG"
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	cds	50001	50249	.	+	.	
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	exon	50001	50249	.	+	.	insertions 0 ; deletions 5
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	splice5	50250	50251	.	+	.	intron_id 2 ; splice_site "GT"
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	intron	50250	50338	.	+	.	intron_id 2
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	splice3	50337	50338	.	+	.	intron_id 1 ; splice_site "AG"
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	cds	50339	50469	.	+	.	
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	exon	50339	50469	.	+	.	insertions 0 ; deletions 0
KV884757.1:subseq(3259506,100000)	exonerate:protein2genome:local	similarity	49322	50469	303	+	.	alignment_id 1 ; Query PSTK ; Align 49322 12 147 ; Align 50003 62 48 ; Align 50051 83 198 ; Align 50341 150 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis