Command line: [exonerate -m p2g --showtargetgff -q MSRB3.x.fa -t MSRB3.extraction.KV884739.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: MSRB3 Protein # Methionine-R-sufoxide reductase 3 (MSRB3) # Zebrafish Target: KV884739.1:subseq(6289616,100000) Monopterus albus unplaced genomic scaffold scaffold51.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 668 Query range: 0 -> 181 Target range: 47005 -> 51820 1 : MetSerGlyPheAsnLeuLeuHisLeuValSerGlnGlyGlnProValLysLeuLysAla : 20 |||||||||||||||||||||||||||:!!!!!:!!.!!||||||||| |||!:!:!! MetSerGlyPheAsnLeuLeuHisLeuIleThrLysSerGlnProValAlaLeuArgSer 47006 : atgTCGGGCTTCAATCTGCTGCATCTAATAACCAAGAGTCAGCCTGTAGCTCTGAGGTCC : 47063 21 : CysGlyLeuProSer{G} >>>> Target Intron 1 >>>> {ly}ThrCysArg : 29 |||.!!|||||||||{|} 2988 bp {||}.!!|||!.! CysSerLeuProSer{G}++ ++{ly}AlaCysHis 47064 : TGCAGTCTTCCCTCA{G}gt.........................ag{GA}GCATGTCAC : 50078 30 : SerLysLysThrTrpProLysThrPheProGluGluGluLeuArgLysArgLeuThrPro : 49 !!!||||||||||||||| !!:!||| ! :::||||||||||||||||||||||||||| ThrLysLysThrTrpProValSerPheSerGlnGluGluLeuArgLysArgLeuThrPro 50079 : ACAAAGAAGACATGGCCAGTGAGCTTCTCtcaggaggagctgaggaaaCGCCTCACACCG : 50138 50 : MetGlnTyrHisValThrGlnGlnLysGlyThrGlu{Se} >>>> Target Intron : 62 ||||||||||||||||||:!!!:!|||||||||{||} 141 bp SerGlnTyrHisValThrGlnGluArgGlyThrGlu{Se}++ 50139 : TCACAGTACCACGTTACCCAGGAGAGAGGAACTGAG{AG}gt.................. : 50181 63 : 2 >>>> {r}AlaPheThrGlyLysTyrValAspAsnLysGluGluGlyThrTyrHis : 78 {|}||||||||||||:!!!:!..! !!:!!|||!!::!!||||||||| ! ++{r}AlaPheThrGlyGluPheThrHisHisLysAspGlnGlyThrTyrAla 50182 : .......ag{T}GCGTTCACAGGCGAGTTCACACATCATAAAGATCAGGGCACCTACGCT : 50366 79 : CysValValCysGlyAlaProLeuPhe{Me} >>>> Target Intron 3 >>>> : 88 |||||||||||||||||||||||||||{! } 323 bp CysValValCysGlyAlaProLeuPhe{Th}++ ++ 50367 : TGTGTTGTCTGTGGGGCCCCGCTCTTC{AC}gt.........................ag : 50719 89 : {t}SerGluLysLysPheAspSerGlySer{G} >>>> Target Intron 4 >>>> : 98 { }|||...! ||||||||||||||||||{|} 556 bp {r}SerAsnThrLysPheAspSerGlySer{G}++ 50720 : {c}tctaaCACTAAATTCGACTCAGGGTCG{G}gt......................... : 50752 99 : {ly}TrpProSerPhePheAspLeuIleAsnLysAspAlaIleAlaGlnThrAspAsp : 116 {||}|||||||||||||||||||||:!:!!.:!!|||:!!|||.!!! !:!!|||||| ++{ly}TrpProSerPhePheAspLeuValLysGluAspSerIleThrLeuSerAspAsp 50753 : ag{GC}TGGCCGTCCTTCTTCGACTTGGTGAAGGAGGACTCTATAACTCTGTCTGATGAT : 51359 117 : PheSerTyrGlyMetHisArgValGluThrThrCysSerGln >>>> Target Intr : 131 ||||||!:!||||||||||||||||||||||||||||||||| 264 bp PheSerPheGlyMetHisArgValGluThrThrCysSerGln++ 51360 : TTCTCCTTTGGGATGCACAGAGTGGAGACCACCTGCAGCCAGgt................ : 51406 132 : on 5 >>>> CysGlyAlaHisLeuGlyHisLeuPheAspAspGlyProArgProThrL : 147 |||||||||||||||||||||||||||:!!|||||||||||||||||| ++CysGlyAlaHisLeuGlyHisLeuPheAsnAspGlyProArgProThrG 51407 : .........agtgtggcGCTCATCTGGGTCACCTGTTCAATGATGGACCAAGACCCACGG : 51716 148 : ysLysArgTyrCysIleAsnSerAlaSerLeuSerPheGlnProLysAsnSerAlaThrG : 167 !||||||||||||:!!|||||||||||||||:!!||||||||||||:!!..! !!.!!. lyLysArgTyrCysValAsnSerAlaSerLeuAlaPheGlnProLysAspAspProAlaS 51717 : GAAAACGCTACTGTGTTAACTCGGCCTCACTGGCTTTCCAGCCCAAAGACGACCCCGCCT : 51776 168 : luGluValGluAlaSerGlyAlaAlaGlyGlnSerSerThrSer : 181 ....! ! !!.!..!! !!.!|||!.!...||||||..!||| erArgSerThrValGluAspValAlaAlaSerSerSerValSer 51777 : CCAGGTCCACAGTCGAGGATGTAGCTGCCAGCAGCTCCGTGAGC : 51820 vulgar: MSRB3 0 181 . KV884739.1:subseq(6289616,100000) 47005 51820 + 668 M 25 75 S 0 1 5 0 2 I 0 2984 3 0 2 S 1 2 M 35 105 S 0 2 5 0 2 I 0 137 3 0 2 S 1 1 M 25 75 S 0 2 5 0 2 I 0 319 3 0 2 S 1 1 M 9 27 S 0 1 5 0 2 I 0 552 3 0 2 S 1 2 M 32 96 5 0 2 I 0 260 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-23 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local gene 47006 51820 668 + . gene_id 1 ; sequence MSRB3 ; gene_orientation + KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local cds 47006 47081 . + . KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local exon 47006 47081 . + . insertions 0 ; deletions 0 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice5 47082 47083 . + . intron_id 1 ; splice_site "GT" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local intron 47082 50069 . + . intron_id 1 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice3 50068 50069 . + . intron_id 0 ; splice_site "AG" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local cds 50070 50178 . + . KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local exon 50070 50178 . + . insertions 0 ; deletions 0 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice5 50179 50180 . + . intron_id 2 ; splice_site "GT" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local intron 50179 50319 . + . intron_id 2 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice3 50318 50319 . + . intron_id 1 ; splice_site "AG" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local cds 50320 50397 . + . KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local exon 50320 50397 . + . insertions 0 ; deletions 0 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice5 50398 50399 . + . intron_id 3 ; splice_site "GT" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local intron 50398 50720 . + . intron_id 3 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice3 50719 50720 . + . intron_id 2 ; splice_site "ag" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local cds 50721 50749 . + . KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local exon 50721 50749 . + . insertions 0 ; deletions 0 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice5 50750 50751 . + . intron_id 4 ; splice_site "GT" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local intron 50750 51305 . + . intron_id 4 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice3 51304 51305 . + . intron_id 3 ; splice_site "AG" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local cds 51306 51403 . + . KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local exon 51306 51403 . + . insertions 0 ; deletions 0 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice5 51404 51405 . + . intron_id 5 ; splice_site "GT" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local intron 51404 51667 . + . intron_id 5 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local splice3 51666 51667 . + . intron_id 4 ; splice_site "ag" KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local cds 51668 51820 . + . KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local exon 51668 51820 . + . insertions 0 ; deletions 0 KV884739.1:subseq(6289616,100000) exonerate:protein2genome:local similarity 47006 51820 668 + . alignment_id 1 ; Query MSRB3 ; Align 47006 1 75 ; Align 50072 27 105 ; Align 50321 63 75 ; Align 50722 89 27 ; Align 51308 99 96 ; Align 51668 131 153 # --- END OF GFF DUMP --- # -- completed exonerate analysis