Command line: [exonerate -m p2g --showtargetgff -q MSRB1b.x.fa -t MSRB1b.extraction.KV884859.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: MSRB1b  Protein # Methionine-R-sufoxide reductase 1b (MSRB1b) # Zebrafish
        Target: KV884859.1:subseq(721558,100000) Monopterus albus unplaced genomic scaffold scaffold171.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 461
   Query range: 0 -> 103
  Target range: 49331 -> 50417

     1 : MetSerPheCysSerPhePheGlyLysGluPheTyrLysAspHisPheLysPro{G}  > :    19
         ||||||||||||..!||||||! !:::|||.!!|||::!|||:!!|||! !|||{|}   
         MetSerPheCysGlnPhePheAspArgGluLeuTyrArgAspAsnPheThrPro{G}++ 
 49332 : ATGTCATTCTGTCAGTTTTTTGACCGTGAGCTCTACCGGGATAATTTCACACCA{G}gt. : 49389

    20 : >>> Target Intron 1 >>>>  {ly}IleTyrAlaCysSerGlnCysGlyHisPro :    29
                  614 bp           {||}!!:|||!.!||||||..!|||..!||||||
                                 ++{ly}MetTyrValCysSerMetCysAsnHisPro
 49390 : ........................ag{GT}ATGTATGTGTGCTCCATGTGTAACCATCCC : 50030

    30 : LeuPheSerSerArgSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr :    49
         |||||||||||||||||||||!:!!  ||||||||||||||||||||||||.!!!!:|||
         LeuPheSerSerArgSerLysPheAlaHisSerSerProTrpProAlaPheAlaAspThr
 50031 : CTGTTCTCCAGTCGCTCCAAGTTTGCTCACTCGTCCCCCTGGCCGGCTTTTGCTGACACC : 50090

    50 : IleArgGluAspSerValThrLysMetMetGluThrLeuThrAlaTyrLys  >>>> Ta :    67
         ||||||||||||||||||||||||..!||||||||||||||||||||||||         
         IleArgGluAspSerValThrLysGlnMetGluThrLeuThrAlaTyrLys++       
 50091 : ATCAGAGAGGACAGTGTCACCAAACAGATGGAGACTCTCACTGCCTACAAGgt....... : 50146

    68 : rget Intron 2 >>>>  ValLeuCysGlyLysCysGlyAsnGlyLeuGlyHisGluP :    80
            163 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++ValLeuCysGlyLysCysGlyAsnGlyLeuGlyHisGluP
 50147 : ..................agGTCTTGTGTGGCAAGTGTGGCAACGGGCTGGGCCATGAGT : 50346

    81 : heLeuAsnAspGlyProGluGluGlyLeuSerArgPheUnkIlePheSerHisSerLeuL :   100
         |||||||||||||||||:!!||||||:!!|||||||||   |||||||||||||||||||
         heLeuAsnAspGlyProLysGluGlyValSerArgPhe***IlePheSerHisSerLeuL
 50347 : TTTTGAATGATGGACCAAAGGAGGGAGTGTCACGTTTTTGAATATTCAGCCACTCGCTGA : 50406

   101 : ysPheValPro :   103
         |||||:!!|||
         ysPheIlePro
 50407 : AGTTCATCCCC : 50417

vulgar: MSRB1b 0 103 . KV884859.1:subseq(721558,100000) 49331 50417 + 461 M 18 54 S 0 1 5 0 2 I 0 610 3 0 2 S 1 2 M 47 141 5 0 2 I 0 159 3 0 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	gene	49332	50417	461	+	.	gene_id 1 ; sequence MSRB1b ; gene_orientation +
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	cds	49332	49386	.	+	.	
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	exon	49332	49386	.	+	.	insertions 0 ; deletions 0
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	splice5	49387	49388	.	+	.	intron_id 1 ; splice_site "GT"
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	intron	49387	50000	.	+	.	intron_id 1
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	splice3	49999	50000	.	+	.	intron_id 0 ; splice_site "AG"
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	cds	50001	50143	.	+	.	
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	exon	50001	50143	.	+	.	insertions 0 ; deletions 0
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	splice5	50144	50145	.	+	.	intron_id 2 ; splice_site "GT"
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	intron	50144	50306	.	+	.	intron_id 2
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	splice3	50305	50306	.	+	.	intron_id 1 ; splice_site "AG"
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	cds	50307	50417	.	+	.	
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	exon	50307	50417	.	+	.	insertions 0 ; deletions 0
KV884859.1:subseq(721558,100000)	exonerate:protein2genome:local	similarity	49332	50417	461	+	.	alignment_id 1 ; Query MSRB1b ; Align 49332 1 54 ; Align 50003 20 141 ; Align 50307 67 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis