Command line: [exonerate -m p2g --showtargetgff -q MSRB1a.x.fa -t MSRB1a.extraction.KV884862.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: MSRB1a  Protein # Methionine-R-sufoxide reductase 1a (MSRB1a) # Zebrafish
        Target: KV884862.1:subseq(1337131,100000) Monopterus albus unplaced genomic scaffold scaffold174.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 428
   Query range: 0 -> 106
  Target range: 49505 -> 50497

     1 : MetSerPheCysSerPheSerGlyGlyGluIleTyrLysAspHisPheGluSer{G}  > :    19
         ||||||||||||||||||! !|||||||||:!!!:!||||||||||||:!! !!{|}   
         MetSerPheCysSerPhePheGlyGlyGluValPheLysAspHisPheLysPro{G}++ 
 49506 : ATGTCATTTTGCTCCTTTTTTGGTGGAGAGGTCTTTAAAGACCATTTTAAACCA{G}gt. : 49563

    20 : >>> Target Intron 1 >>>>  {ly}MetTyrValCysAlaGlnCysGlyTyrGlu :    29
                  449 bp           {||}!!:|||||||||:!!:!!||||||:!!:!!
                                 ++{ly}IleTyrValCysSerLysCysGlyHisGln
 49564 : ........................ag{GC}ATCTATGTTTGTTCCAAGTGTGGTCACCAG : 50039

    30 : LeuPheSerSerArgSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr :    49
         ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
         LeuPheSerSerCysSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr
 50040 : CTcttctccagctgctccaagtaCGAGCACTCCTCTCCCTGGCCAGCTTTCACAGAGACC : 50099

    50 : IleHisGluAspSerValSerLysGlnGluGluArgTrpGlyAlaTyrLys  >>>> Ta :    67
         |||! !:!!||||||||||||||||||  !||||||    !!|||!:!|||         
         IleLeuLysAspSerValSerLysGlnProGluArgProArgAlaPheLys++       
 50100 : ATCCTTAAAGACAGTGTGTCCAAACAACCGGAGCGTCCCAGAGCATTTAAGgt....... : 50155

    68 : rget Intron 2 >>>>  ValArgCysGlyLysCysGlyAsnGlyLeuGlyHisGluP :    80
            225 bp           |||! !||||||||||||||||||||||||||||||||||
                           ++ValLeuCysGlyLysCysGlyAsnGlyLeuGlyHisGluP
 50156 : ..................agGTGCTGTGTGGAAAGTGTGGAAACGGACTGGGCCATGAGT : 50417

    81 : heValAsnAspGlyProLysHisGlyLeuSerArgPheUnkIlePheSerSerSerLeuL :   100
         |||||||||||||||||    ! |||! !|||||||||   |||||||||||||||||||
         heValAsnAspGlyProAlaLysGlyGlnSerArgPhe***IlePheSerSerSerLeuL
 50418 : TTGTGAACGATGGACCAGCCAAAGGGCAGTCTCGCTTCTGAATATTCAGCAGCTCACTGA : 50477

   101 : ysPheIleProLysValLys :   106
         ||||||||||||||! !|||
         ysPheIleProLysGlyLys
 50478 : AGTTCATCCCTAAAGGTAAA : 50497

vulgar: MSRB1a 0 106 . KV884862.1:subseq(1337131,100000) 49505 50497 + 428 M 18 54 S 0 1 5 0 2 I 0 445 3 0 2 S 1 2 M 47 141 5 0 2 I 0 221 3 0 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	gene	49506	50497	428	+	.	gene_id 1 ; sequence MSRB1a ; gene_orientation +
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	cds	49506	49560	.	+	.	
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	exon	49506	49560	.	+	.	insertions 0 ; deletions 0
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	splice5	49561	49562	.	+	.	intron_id 1 ; splice_site "GT"
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	intron	49561	50009	.	+	.	intron_id 1
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	splice3	50008	50009	.	+	.	intron_id 0 ; splice_site "AG"
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	cds	50010	50152	.	+	.	
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	exon	50010	50152	.	+	.	insertions 0 ; deletions 0
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	splice5	50153	50154	.	+	.	intron_id 2 ; splice_site "GT"
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	intron	50153	50377	.	+	.	intron_id 2
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	splice3	50376	50377	.	+	.	intron_id 1 ; splice_site "AG"
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	cds	50378	50497	.	+	.	
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	exon	50378	50497	.	+	.	insertions 0 ; deletions 0
KV884862.1:subseq(1337131,100000)	exonerate:protein2genome:local	similarity	49506	50497	428	+	.	alignment_id 1 ; Query MSRB1a ; Align 49506 1 54 ; Align 50012 20 141 ; Align 50378 67 120
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis