Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP8.x.fa -t GP8.extraction.KV884708.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: GP8  Protein # Glutathione peroxidase 8 (GPx8) # Zebrafish
        Target: KV884708.1:subseq(3790226,100000) Monopterus albus unplaced genomic scaffold scaffold20.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 598
   Query range: 0 -> 153
  Target range: 49769 -> 51413

     1 : ArgLysThrLysAspPheTyrSerTyrGluValLysAspAlaArgGlyArgThrValSer :    20
         |||||| !!! !||||||||||||!:!||||||||||||!.!!:!||||||  !||||||
         ArgLysProThrAspPheTyrSerPheGluValLysAspValLysGlyArgLeuValSer
 49770 : AGGAAGCCCACGGATTTTTATTCTTTCGAGGTCAAAGACGTGAAGGGGAGGCTCGTTTCC : 49827

    21 : LeuGluLysTyrArgGlyLys  >>>> Target Intron 1 >>>>  ValSerLeuV :    31
         |||||||||||||||||||||            152 bp           !.!|||||||
         LeuGluLysTyrArgGlyLys++                         ++AlaSerLeuV
 49828 : CTGGAGAAGTACCGAGGAAAAgt.........................agGCGTCGTTGG : 50012

    32 : alValAsnValAlaSerGlySerGluLeuThrGluGlnSerTyrArgAlaLeuGlnGluL :    51
         |||||||||||||||||  !||||||! !||||||  !!:!||||||:!!||||||||||
         alValAsnValAlaSerHisSerGluGlnThrGluAlaAsnTyrArgSerLeuGlnGluL
 50013 : TTGTAAACGTGGCGAGTCACAGCGAGCAGACGGAGGCGAACTACAGGTCTCTGCAGGAGC : 50072

    52 : euHisArgGluLeuGlyThrSerHisPheAsnValLeuAlaPheProCysSerGlnTyrG :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||.!!|||!:!|
         euHisArgGluLeuGlyThrSerHisPheAsnValLeuAlaPheProCysGlyGlnPheG
 50073 : TGCACCGGGAGCTGGGCACCTCTCACTTCAACGTCCTGGCCTTCCCCTGTGGCCAGTTCG : 50132

    72 : lyAspThrGluSerGlyThrSerArgGluIleGluAlaPheAlaLysSerAsnTyrGlyV :    91
         ||||||||||| !!||||||||||||!!:|||||||||||||||||||||!.!|||||||
         lyAspThrGluProGlyThrSerArgAspIleGluAlaPheAlaLysSerThrTyrGlyV
 50133 : GTGACACAGAGCCCGGGACCAGCCGGGACATCGAGGCTTTCGCCAAGTCCACTTACGGTG : 50192

    92 : alThrPheProIlePheAsnLysIleLysIleMetGlySerGluAlaGluProAlaPheA :   111
         |||||||||||.!!|||!:!||||||||||||:!!||||||||||||!!:||||||||||
         alThrPheProPhePheSerLysIleLysIleLeuGlySerGluAlaAspProAlaPheA
 50193 : TTACCTTCCCCTTTTTCAGCAAGATCAAAATACTGGGCTCAGAAGCGGATCCTGCCTTCA : 50252

   112 : rgPheLeuThrGlyArgLys  >>>> Target Intron 2 >>>>  TrpAsnPheTr :   121
         |||||||||||||| !!:!!           1033 bp           |||||||||||
         rgPheLeuThrGlyTrpGln-+                         ++TrpAsnPheTr
 50253 : GATTCCTCACAGGTTGGCAGat.........................agTGGAACTTCTG : 51315

   122 : pLysPheLeuValSerProGluGlyGlnValValArgPheTrpLysProGluGluProVa :   141
         |||||||||||||!:!|||||||||:!!|||||||||||||||!:! !!!!:||||||:!
         pLysPheLeuValAsnProGluGlyLysValValArgPheTrpArgThrAspGluProMe
 51316 : GAAGTTTCTGGTCAATCCAGAGGGTAAAGTGGTCCGGTTCTGGAGAACTGACGAGCCCAT : 51375

   142 : lSerAspIleArgLysGluAlaThrThrLeuValArg :   153
         !..!..!||||||:!!|||||||||..!|||||||||
         tGluSerIleArgGlnGluAlaThrValLeuValArg
 51376 : GGAGAGTATTAGACAAGAGGCCACAGTGCTGGTGCGA : 51413

vulgar: GP8 0 153 . KV884708.1:subseq(3790226,100000) 49769 51413 + 598 M 27 81 5 0 2 I 0 148 3 0 2 M 90 270 5 0 2 I 0 1029 3 0 2 M 36 108
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	gene	49770	51413	598	+	.	gene_id 1 ; sequence GP8 ; gene_orientation +
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	cds	49770	49850	.	+	.	
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	exon	49770	49850	.	+	.	insertions 0 ; deletions 0
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	splice5	49851	49852	.	+	.	intron_id 1 ; splice_site "GT"
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	intron	49851	50002	.	+	.	intron_id 1
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	splice3	50001	50002	.	+	.	intron_id 0 ; splice_site "AG"
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	cds	50003	50272	.	+	.	
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	exon	50003	50272	.	+	.	insertions 0 ; deletions 0
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	splice5	50273	50274	.	+	.	intron_id 2 ; splice_site "AT"
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	intron	50273	51305	.	+	.	intron_id 2
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	splice3	51304	51305	.	+	.	intron_id 1 ; splice_site "AG"
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	cds	51306	51413	.	+	.	
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	exon	51306	51413	.	+	.	insertions 0 ; deletions 0
KV884708.1:subseq(3790226,100000)	exonerate:protein2genome:local	similarity	49770	51413	598	+	.	alignment_id 1 ; Query GP8 ; Align 49770 1 81 ; Align 50003 28 270 ; Align 51306 118 108
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis