Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP4a.x.fa -t GP4a.extraction.KV884810.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: GP4a  Protein # Glutathione peroxidase 4a (GPx4a) # Zebrafish
        Target: KV884810.1:subseq(1119524,100000) Monopterus albus unplaced genomic scaffold scaffold122.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 492
   Query range: 0 -> 113
  Target range: 49722 -> 50372

     1 : PheThrTyrPheArgGlyLysValValIleIleThrAsnValAlaSerLysUnkGlyLys :    20
         |||      |||||||||!!.||||||||||||||||||||||||||||||   ||||||
         PheTyrIlePheArgGlyAsnValValIleIleThrAsnValAlaSerLys***GlyLys
 49723 : ttttatattttcagggGGAATGTTGTCATTATCACCAATGTTGCCTCCAAATGAGGTAAA : 49780

    21 : ThrProValAsnTyrSerGlnPheAlaGluMetHisAlaLysTyrSerGluArgGlyLeu :    40
         |||||||||||||||||||||||||||||||||||||||! !|||:!!||||||..!|||
         ThrProValAsnTyrSerGlnPheAlaGluMetHisAlaMetTyrAlaGluArgAsnLeu
 49781 : ACCCCAGTGAATTACTCTCAGTTTGCAGAAATGCACGCCATGTATGCTGAGAGAAATTTG : 49840

    41 : ArgIleLeuAlaPheProSerAsnGlnPheGlyArgGln  >>>> Target Intron  :    54
         !!!||||||||||||||||||||||||||||||!.!|||            118 bp   
         SerIleLeuAlaPheProSerAsnGlnPheGlyAsnGln++                   
 49841 : AGCATCCTCGCCTTCCCTTCTAACCAGTTTGGGAATCAGgt................... : 49884

    55 : 1 >>>>  GluProGlyThrAsnSerGlnIleLysGluPheAlaLysSerTyrAsnAlaG :    71
                 |||||||||!.!.!.!!!|||||||||:!!||||||:!!||||||||||||:
               ++GluProGlyAsnGluThrGlnIleLysGlnPheAlaGluSerTyrAsnAlaG
 49885 : ......agGAGCCAGGCAACGAAACTCAGATCAAGCAGTTTGCTGAGTCATACAATGCCC : 50051

    72 : luPheAspMetPheSerLysIleAspValAsnGlyAspGlyAlaHisProLeuTrpLysT :    91
         !!||||||:!!|||||||||||||||||||||||||||..!|||||||||||||||||||
         lnPheAspLeuPheSerLysIleAspValAsnGlyAspAsnAlaHisProLeuTrpLysT
 50052 : AGTTTGACCTGTTCAGTAAAATCGATGTGAACGGGGACAATGCTCACCCTCTGTGGAAGT : 50111

    92 : rpLeuLysAspGlnProAsnGlyLysGlyPheLeuGly{As}  >>>> Target Intr :   104
         ||||||||!!:||||||||||||!:!||||||||||||{||}            193 bp
         rpLeuLysGluGlnProAsnGlyArgGlyPheLeuGly{As}++                
 50112 : GGCTGAAGGAGCAGCCCAATGGGAGGGGCTTCCTGGGA{AA}gt................ : 50154

   105 : on 2 >>>>  {n}GlyIleLysTrpAsnPheThrLysVal :   113
                    {|}.!!||||||||||||||||||||||||
                  ++{n}SerIleLysTrpAsnPheThrLysVal
 50155 : .........ag{T}AGTATCAAGTGGAATTTCACTAAGGTA : 50372

vulgar: GP4a 0 113 . KV884810.1:subseq(1119524,100000) 49722 50372 + 492 M 53 159 5 0 2 I 0 114 3 0 2 M 50 150 S 0 2 5 0 2 I 0 189 3 0 2 S 1 1 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	gene	49723	50372	492	+	.	gene_id 1 ; sequence GP4a ; gene_orientation +
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	cds	49723	49881	.	+	.	
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	exon	49723	49881	.	+	.	insertions 0 ; deletions 0
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	splice5	49882	49883	.	+	.	intron_id 1 ; splice_site "GT"
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	intron	49882	49999	.	+	.	intron_id 1
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	splice3	49998	49999	.	+	.	intron_id 0 ; splice_site "AG"
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	cds	50000	50151	.	+	.	
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	exon	50000	50151	.	+	.	insertions 0 ; deletions 0
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	splice5	50152	50153	.	+	.	intron_id 2 ; splice_site "GT"
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	intron	50152	50344	.	+	.	intron_id 2
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	splice3	50343	50344	.	+	.	intron_id 1 ; splice_site "AG"
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	cds	50345	50372	.	+	.	
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	exon	50345	50372	.	+	.	insertions 0 ; deletions 0
KV884810.1:subseq(1119524,100000)	exonerate:protein2genome:local	similarity	49723	50372	492	+	.	alignment_id 1 ; Query GP4a ; Align 49723 1 159 ; Align 50000 54 150 ; Align 50346 105 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis