Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP3b.x.fa -t GP3b.extraction.KV884757.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: GP3b Protein # Glutathione peroxidase 3b (GPx3b) # Zebrafish Target: KV884757.1:subseq(2964287,100000) Monopterus albus unplaced genomic scaffold scaffold69.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 572 Query range: 0 -> 174 Target range: 50738 -> 1448 1 : MetAlaAlaAsnSerValTyrAspPheThrValGluThrLeuGluGluLysSerValSer : 20 |||:!! !!!.! !||||||||||||:!!!.!:!!||||||!!:! !:!! !:!! !! MetSerAsnLysLeuValTyrAspPheSerAlaLysThrLeuAspGlyGlnLeuIlePro 50738 : ATGTCAAATAAATTAGTTTATGATTTCTCTGCTAAGACCCTGGATGGACAGCTGATCCCA : 50681 21 : LeuAspIlePheArgGlyLysValLeuLeuIleMetAsnValAlaThrPheUnkGlySer : 40 |||..!! !!:!|||||||||||||||||||||:!:||||||||||||||| |||||| LeuSerAsnTyrArgGlyLysValLeuLeuIleValAsnValAlaThrPhe***GlySer 50680 : CTCAGTAACTACAGGGGTAAGGTGCTTCTCATCGTCAATGTTGCCACCTTCTGAGGGTCA : 50621 41 : ThrGln >>>> Target Intron 1 >>>> TyrHisArgMetAsnAlaLeuMetA : 51 |||:!! 111 bp |||||||||:!!||||||||||||! ThrLys+- ++TyrHisArgLeuAsnAlaLeuMetG 50620 : ACAAAAgg.........................agTACCACCGACTGAATGCACTGATGG : 50477 52 : spMetTyrGlyGlyGlnArgPheThrValLeuGlyPheProCysAsnGlnPheGlyLeuG : 71 !:|||!:!|||..! !.!||||||||||||!.!||| !!||||||||||||||||||| luMetPheGlyAsnPheAsnPheThrValLeuAlaPheSerCysAsnGlnPheGlyLeuG 50476 : AAATGTTTGGCAACTTTAACTTTACTGTTCTGGCATTCTCCTGCAACCAGTTTGGTCTTC : 50417 72 : lnSerPro{G} >>>> Target Intron 2 >>>> {ly}GluAsnHisGluThrL : 80 ||||||||{!} 402 bp { !}! !||||||||||||| lnSerPro{G}++ ++{lu}ValAsnHisGluThrL 50416 : AGTCACCA{G}gt.........................ag{AA}GTGAATCATGAAACCC : 49988 81 : euAsnValLeuGlnHisValArgProGlySerGlyPheLeuProLysPheProIlePheS : 100 ||!:!:!!|||:!!|||||||||||||||.!!||||||:!!||||||||||||:!!|||. euSerIleLeuLysHisValArgProGlyGlyGlyPheValProLysPheProValPheG 49987 : TCAGTATTCTGAAGCATGTGAGACCTGGTGGGGGCTTTGTGCCAAAGTTTCCAGTCTTTG : 49928 101 : erArgIleGluValAsnGlySerAspGluAspProLeuTyrAlaTyrLeuLys >>>> : 118 !!!:!:!!:!!||||||||| !:!!||||||||||||!:!.!!||||||||| lyLysValLysValAsnGlyLeuAsnGluAspProLeuPheThrTyrLeuLys++ 49927 : GGAAGGTTAAGGTGAACGGACTAAACGAAGATCCTCTTTTTACTTATCTAAAGgt..... : 49872 119 : Target Intron 3 >>>> GluSerLeuProPheValAsnProValIleGlyAspIl : 130 90 bp ||||||||||||! !||||||||||||||||||||||| ++GluSerLeuProSerValAsnProValIleGlyAspIl 49871 : ....................agGAATCTTTGCCATCTGTCAACCCTGTTATTGGAGATAT : 49748 131 : eArgLysLeuTyrTrpSerProIleLysAlaAsnAspValArgTrpAsnPheGluLysPh : 150 |!.!|||!!!||||||||||||:!!|||!.!!:!|||:!!|||||||||||||||||||| eAsnLysPheTyrTrpSerProValLysValSerAspIleArgTrpAsnPheGluLysPh 49747 : TAACAAATTCTACTGGTCCCCAGTCAAAGTCAGTGACATTCGGTGGAATTTTGAGAAGTT : 49688 151 : eLeuIleThrAlaAspGlyArgProTyrLys{Ar} >>>> Target Intron 4 >> : 161 |||||||||||||:!!|||! !|||!:!|||{||} 48165 bp eLeuIleThrAlaAsnGlyIleProPheLys{Ar}++ 49687 : TCTTATTACTGCAAATGGCATACCTTTCAAA{AG}gt....................... : 49651 162 : >> {g}TyrTyrCysGluThrAspMetGlnHisLysThrAsnIle : 174 {|}!::||| !...||| !!!!:! !|||:!! ...||| ++{g}TrpTyrThrSerThrHisIleLeuHisGluPheGlyIle 49650 : ..ag{G}TGGTACACTTCCACACACATTCTGCATGAATttggtata : 1449 vulgar: GP3b 0 174 . KV884757.1:subseq(2964287,100000) 50738 1448 - 572 M 42 126 5 0 2 I 0 107 3 0 2 M 31 93 S 0 1 5 0 2 I 0 398 3 0 2 S 1 2 M 43 129 5 0 2 I 0 86 3 0 2 M 43 129 S 0 2 5 0 2 I 0 48161 3 0 2 S 1 1 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local gene 1449 50738 572 - . gene_id 1 ; sequence GP3b ; gene_orientation + KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local cds 50613 50738 . - . KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local exon 50613 50738 . - . insertions 0 ; deletions 0 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice5 50611 50612 . - . intron_id 1 ; splice_site "GG" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local intron 50502 50612 . - . intron_id 1 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice3 50502 50503 . - . intron_id 0 ; splice_site "AG" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local cds 50408 50501 . - . KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local exon 50408 50501 . - . insertions 0 ; deletions 0 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice5 50406 50407 . - . intron_id 2 ; splice_site "GT" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local intron 50006 50407 . - . intron_id 2 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice3 50006 50007 . - . intron_id 1 ; splice_site "AG" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local cds 49875 50005 . - . KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local exon 49875 50005 . - . insertions 0 ; deletions 0 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice5 49873 49874 . - . intron_id 3 ; splice_site "GT" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local intron 49785 49874 . - . intron_id 3 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice3 49785 49786 . - . intron_id 2 ; splice_site "AG" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local cds 49654 49784 . - . KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local exon 49654 49784 . - . insertions 0 ; deletions 0 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice5 49652 49653 . - . intron_id 4 ; splice_site "GT" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local intron 1489 49653 . - . intron_id 4 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local splice3 1489 1490 . - . intron_id 3 ; splice_site "AG" KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local cds 1449 1488 . - . KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local exon 1449 1488 . - . insertions 0 ; deletions 0 KV884757.1:subseq(2964287,100000) exonerate:protein2genome:local similarity 1449 50738 572 - . alignment_id 1 ; Query GP3b ; Align 50739 1 126 ; Align 50502 43 93 ; Align 50004 75 129 ; Align 49785 118 129 ; Align 1488 162 39 # --- END OF GFF DUMP --- # -- completed exonerate analysis