_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-36
 Query name: gi|835873421|ref|XP_004541127.2| PREDICTED: glutathione peroxidase 3 [Maylandia zebra]
 Query range: 25-244  (total 249)

 Target: /data/www-rg/seblastian_results/722156480/tempfiles/temptarget.fasta
 Chromosome: KV884690.1:subseq_498061,100000_ Strand: -
 Positions:
 -Exon 1  54643        54726
 -Exon 2  51203        51356
 -Exon 3  50986        51103
 -Exon 4  50332        50431
 -Exon 5  49764        49967

 Redox box: no

Query   KDCTMWAVLLLLLLGLLLPGSPVYVVGY <---Intron---> QQCNSSVEGTIYKYRAKTLNGSQTVNFSNYAGKAVLFVNVATYUGLTSQYVE <--
        || ||   | ||||||| | /    /   <   3286bp   > |/|/ | /||||||/||||||/ ||||||| || ||||||||||| | |||| <  
Target  KDGTMRPFLPLLLLGLLRPCTAEAPLKQ                QRCDFSTDGTIYKYQAKTLNGNHTVNFSNYRGKIVLFVNVATYUGYTFQYVE    
        aggaaccttcccccgcccctagggccac                cctgttaggaatatcgaacagacagataatagaagctgaggattgtatctgg    
        aagctgcttcttttgttgcgccacctaa                aggatccagctaaaacactagaactatgaaggatttttatccaggactaat     
        gccgggccaagggctggaccctacgcgg                ggtcccatcctcacgagtatgtctgcctccacgtcccctgtacaacttgtg     
                                                                                               *            

Query   -Intron---> LNALYEEMNPLGLTILGFPCNQFGKQEPGQRHEILPGLK <---Intron---> YVRPGNGFVPNFLLFEKGDVNGKNEQEVYTFLK
          99bp    > ||||/|||    ||/||||||||||||||/||||||||| <   554bp    > /|||||||||||||||| ||||/|||||/||||
Target              LNALHEEMKSRRLTVLGFPCNQFGKQEPGERHEILPGLK                HVRPGNGFVPNFLLFEKSDVNGQNEQEVFTFLK
                    cagccggaatcacagcgtctactgacgcggacgaccgta                cgacgagtgcatcctgaaggagcagcggtatca
                   atactaaatacggtcttgtcgaatgaaacgagaattcgta                atgcgagttcattttaagatagaaaaattctta
                   agtaatgggaacaccttatcccgtgagaggaatacgata                atcagctattaccggtgattgcagcgggtctcta
                                                                                                            

Query    <---Intron---> SSCPAVGEDFGPMYGRLFWEPLKISDIKWNFEKFLVGMDGKPVMRWQPTTKVSVVRADIRRYLLEQYT
         <   364bp    > /||| ||/ ||    |||| |||//|||||||||||| |||||||| |/  /| /|||||/|||/ ||
Target                  NSCPPVGDSFGDPDKRLFWTPLKVNDIKWNFEKFLVGPDGKPVMRWHPSVNISEIRADIRKYLLQLYT
                        attccgggatggcgaatttaccagagaatatgatcggcggacgaatccagaatgacggacatccctta
                        acgcctgagtgacaagttgcctataatagataatttgcagacttggacgtatcatgcatgaattatac
                        ccctatacctgcttgagcggtggctccggctagtggggcggtagggcatccttgcatcctacgcaact
                                                                                            
 Sequence until next stop: 
TCTGTGGAAGATATTTTTAATTAG
 S  V  E  D  I  F  N  * 

 Distance CDS-SECIS: 137 ; UGA-SECIS: 581

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884690.1:subseq_498061,100000_ Strand = - Positions = 49626 - 49556
 Found by:  Infernal (score=19.53) Covels (score=22.77)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -14.77

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({((((---....([[((((((((({(..................)})))))))))]])----..-.))))}))).
 target  AUGACAUCU---UGAAUGAUGAGGAGGCUUGAAAACAGAAAUUCUGUGGUGCCUCUUUGGAG----UC-UGGGUUUCAG
                         ****           ^^^                        ****