Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP3a.x.fa -t GP3a.extraction.KV884690.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: GP3a Protein # Glutathione peroxidase 3a (GPx3a) # Zebrafish Target: KV884690.1:subseq(498061,100000) Monopterus albus unplaced genomic scaffold scaffold2.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 699 Query range: 7 -> 222 Target range: 90093 -> 49754 8 : TrpThrSerValValLeuLeuLeuAlaLeuMetHisLys{Il} >>>> Target Int : 21 |||..! !|||:!!:!!|||:!!::!! !:!! !! {! } 24425 TrpValHisValLeuMetLeuValSerCysValAspVal{Se}++ 90093 : TGGGTGCACGTGTTGATGTTAGTGAGTTGTGTGGATGTC{AG}gt............... : 90050 22 : ron 1 >>>> {e}AlaAlaLeuSerAsnThrGlnAlaCysAsnSer{A} >>>> Ta : 33 bp {!}..!!.!||||||...!:!! !!.!||| !|||{|} ++{r}CysValLeuSerGlySerLeuGlyCysPheSer{A}++ 90049 : ..........ag{C}TGTGTTTTAAGTGGGAGTCTAGGGTGTTTCAGT{G}gt....... : 65590 34 : rget Intron 2 >>>> {la}Ala{G} >>>> Target Intron 3 >>>> { : 35 9239 bp {||}|||{!} 5013 bp { ++{la}Ala{A}++ ++{ 65589 : ..................ag{CT}GCA{G}gt.........................ag{ : 51334 36 : ly}AspSerPheHisAsnTyrGlyAlaLysThrIleAsnGlyThrGlnPheIleProPhe : 54 !}! !!!!.!!:!!!!.||| !|||||||||:!!||||||!.!!!. !:!: !||| sp}GlyThrIleTyrLysTyrGlnAlaLysThrLeuAsnGlyAsnHisThrValAsnPhe 51333 : AT}GGCACCATTTACAAATACCAGGCAAAGACTCTAAATGGGAATCACACTGTGAACTTC : 51278 55 : SerHisTyrAlaGlyLysHisValLeuValValAsnValAlaThrTyrUnkGlyLeuThr : 74 |||:!!||| !|||||| !|||||| !!|||||||||||||||||| |||! !||| SerAsnTyrArgGlyLysIleValLeuPheValAsnValAlaThrTyr***GlyTyrThr 51277 : AGTAACTACAGAGGCAAGATTGTCCTCTTCGTCAATGTGGCTACATACTGAGGATACACT : 51218 75 : PheGlnTyrVal{G} >>>> Target Intron 4 >>>> {lu}LeuAsnAlaLeu : 83 ||||||||||||{|} 99 bp {||}|||||||||||| PheGlnTyrVal{G}++ ++{lu}LeuAsnAlaLeu 51217 : TTTCAGTATGTG{G}gt.........................ag{AA}CTGAATGCACTA : 51092 84 : HisGluGluLeuArgHisLeuGlyPheThrIleLeuGlyPheProCysAspGlnPheGly : 103 |||||||||:!!!:! ! ! !!.!!|||:!!|||||||||||||||:!!||||||||| HisGluGluMetLysSerArgArgLeuThrValLeuGlyPheProCysAsnGlnPheGly 51091 : CATGAGGAGATGAAATCACGCAGACTCACCGTTCTTGGATTTCCCTGCAACCAGTTTGGG : 51032 104 : LysGlnGluProGlyGluAsnAsnGluIleLeuSerAlaLeu{Ly} >>>> Target : 118 ||||||||||||||||||!..:!!||||||||| !!!.!|||{||} 55 LysGlnGluProGlyGluArgHisGluIleLeuProGlyLeu{Ly}++ 51031 : AAACAGGAACCGGGGGAAAGACATGAAATCCTGCCAGGTTTA{AA}gt............ : 50983 119 : Intron 5 >>>> {s}TyrValArgProGlyAsnGlyPheValProAsnPheGlnLeu : 132 4 bp {|}:!!|||||||||||||||||||||||||||||||||! !||| ++{s}HisValArgProGlyAsnGlyPheValProAsnPheLeuLeu 50982 : .............ag{A}CATGTCAGACCGGGCAATGGATTTGTTCCAAACTTCCTGCTG : 50391 133 : PheGluLysGlyAspValAsnGlyAspGlyGluGlnAlaLeuPheThrPheLeuLys > : 152 |||||||||.!!||||||||||||.!...!||||||! !:!!||||||||||||||| PheGluLysSerAspValAsnGlyGlnAsnGluGlnGluValPheThrPheLeuLys++ 50390 : TTTGAGAAAAGTGATGTGAACGGACAGAACGAGCAGGAGGTTTTCACTTTCCTTAAAgt. : 50329 153 : >>> Target Intron 6 >>>> AsnAlaCysProProValGlyGluSerPheGlyA : 163 364 bp |||:!!|||||||||||||||!!:|||||||||! ++AsnSerCysProProValGlyAspSerPheGlyA 50328 : ........................agAACTCCTGCCCTCCAGTTGGAGACAGCTTTGGGG : 49934 164 : laThrSerAsnArgLeuPheTrpGluProLeuLysValAsnAspIleLysTrpAsnPheG : 183 ! !!..!!!.|||||||||||| !|||||||||||||||||||||||||||||||||| spProAspLysArgLeuPheTrpThrProLeuLysValAsnAspIleLysTrpAsnPheG 49933 : ACCCTGATAAGAGATTGTTCTGGACGCCTCTGAAGGTCAATGACATCAAGTGGAACTTTG : 49874 184 : luLysPheLeuLeuAspProAspGlyArgProValMetArgTrpPheProArgValAsnV : 203 |||||||||||:!!! |||||||||!:!||||||||||||||| !|||!!!||||||: luLysPheLeuValGlyProAspGlyLysProValMetArgTrpHisProSerValAsnI 49873 : AAAAGTTTCTGGTGGGGCCGGACGGGAAGCCTGTAATGAGGTGGCACCCAAGTGTCAACA : 49814 204 : alSerGluValArgAlaAspIleLeuLysTyrPheHisGlnLeuLeuGlnThrAlaGln : 222 !!||||||:!!||||||||||||! !||||||.!.! !||||||! ! :!!!.!:!! leSerGluIleArgAlaAspIleArgLysTyrLeuLeuGlnLeuTyrThrSerValGlu 49813 : TTTCTGAGATCCGAGCTGACATCCGTAAATACCTGCTCCAATTATACACTTCTGTGGAA : 49755 vulgar: GP3a 7 222 . KV884690.1:subseq(498061,100000) 90093 49754 - 699 M 13 39 S 0 2 5 0 2 I 0 24421 3 0 2 S 1 1 M 11 33 S 0 1 5 0 2 I 0 9235 3 0 2 S 1 2 M 1 3 S 0 1 5 0 2 I 0 5009 3 0 2 S 1 2 M 43 129 S 0 1 5 0 2 I 0 95 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 550 3 0 2 S 1 1 M 33 99 5 0 2 I 0 360 3 0 2 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884690.1:subseq(498061,100000) exonerate:protein2genome:local gene 49755 90093 699 - . gene_id 1 ; sequence GP3a ; gene_orientation + KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 90053 90093 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 90053 90093 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice5 90051 90052 . - . intron_id 1 ; splice_site "GT" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local intron 65628 90052 . - . intron_id 1 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice3 65628 65629 . - . intron_id 0 ; splice_site "AG" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 65593 65627 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 65593 65627 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice5 65591 65592 . - . intron_id 2 ; splice_site "GT" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local intron 56354 65592 . - . intron_id 2 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice3 56354 56355 . - . intron_id 1 ; splice_site "AG" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 56348 56353 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 56348 56353 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice5 56346 56347 . - . intron_id 3 ; splice_site "GT" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local intron 51335 56347 . - . intron_id 3 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice3 51335 51336 . - . intron_id 2 ; splice_site "AG" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 51203 51334 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 51203 51334 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice5 51201 51202 . - . intron_id 4 ; splice_site "GT" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local intron 51104 51202 . - . intron_id 4 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice3 51104 51105 . - . intron_id 3 ; splice_site "AG" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 50986 51103 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 50986 51103 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice5 50984 50985 . - . intron_id 5 ; splice_site "GT" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local intron 50432 50985 . - . intron_id 5 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice3 50432 50433 . - . intron_id 4 ; splice_site "AG" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 50332 50431 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 50332 50431 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice5 50330 50331 . - . intron_id 6 ; splice_site "GT" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local intron 49968 50331 . - . intron_id 6 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local splice3 49968 49969 . - . intron_id 5 ; splice_site "AG" KV884690.1:subseq(498061,100000) exonerate:protein2genome:local cds 49755 49967 . - . KV884690.1:subseq(498061,100000) exonerate:protein2genome:local exon 49755 49967 . - . insertions 0 ; deletions 0 KV884690.1:subseq(498061,100000) exonerate:protein2genome:local similarity 49755 90093 699 - . alignment_id 1 ; Query GP3a ; Align 90094 8 39 ; Align 65627 22 33 ; Align 56352 34 3 ; Align 51333 36 129 ; Align 51102 80 114 ; Align 50431 119 99 ; Align 49968 152 213 # --- END OF GFF DUMP --- # -- completed exonerate analysis