_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-45
 Query name: gi|835868918|ref|XP_012777272.1| PREDICTED: glutathione peroxidase 2 [Maylandia zebra] >gi|923840712|ref|XP_013768723.1| PREDICTED: glutathione peroxidase 2 [Pundamilia nyererei]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/594441644/tempfiles/temptarget.fasta
 Chromosome: KV884828.1:subseq_702560,100000_ Strand: -
 Positions:
 -Exon 1  49779        50000
 -Exon 2  49099        49272
 -Exon 3  48937        49047

 Redox box: no

Query   MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ <---Intron---> ENCTNGEILN
        |||||||||||/||||||||||||||||||||||||||||||||  /||||||||||||||||||||||||||| <   506bp    > |||/|||||/
Target  MTFIAKTFYDLKATTLEGDSVDFNVFRGRVVLIENVASLUGTTTGAYSELNQLQSKYPHRLVVLGFPCNQFGYQ                ENCSNGEILS
        aatagaattgtagaacgggtggtagtagcggcagaggtctgaaaggtagcacccaatccccggcgtctactgtc                gattaggaca
        tcttcactaataccctagactatattgggttttaatcctggcccgcagataatagaacagttttgtcgaatgaa                aagcagattg
        gccccgccccgaccgggacggctcgtgaggccagtgcgcaccccgcccaccgtgcgcctgggcgttctcgtatg                gcccctgcat
                                               *                                                            

Query   SLQHVRPGGGFKPIFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPNS <---Intron---> LIQDPKFLVWSPISRTDISWNFEKFLIGPEGEPFKR
        |||||||||||/| ||/|||||||||||||||||||/|||||||||/| <    51bp    >                       ||||||||||||||
Target  SLQHVRPGGGFQPNFTVFEKCDVNGTNTHPVFAYLKNKLPYPDDDPSS                ----------------------EKFLIGPEGEPFKR
        tcccgccgggtccatagtgatggagaaaccgtgtcaaacctcgggcat                ----------------------gatcagcgggctaa
        ctaatgcgggtacatcttaagatagcacacttcataaatcacaaacgc                ----------------------aatttgcagactag
        aggtacattctgccctctggtcctaacatactctgacgcttcttctcn                ----------------------gatctgtgagctaa
                                                                                                            

Query   YSKKFPTIDIEPDIQRLLRLTKT
        |||/||||//|||||||||||||
Target  YSKRFPTIEMEPDIQRLLRLTKT
        taaatcaagagcgacactataaa
        agagtcctatacatagttgtcac
        ccagccctaggtccaagaaacgt
                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 71 ; UGA-SECIS: 458

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884828.1:subseq_702560,100000_ Strand = - Positions = 48865 - 48798
 Found by:  Infernal (score=20.21) Covels (score=19.39)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -13.5

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....{[[((((((((((((.........-----..))))))))))))]]}..--..-.)))))....
 target  AAGACUUAU---UAAAUGAGGGUGAUAUUCUGAAAAGCCU-----AGGGAAUAUUAUCUGAUGU--CU-UAUAAGCGCU
                         ****            ^^^                       ****