Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP2.x.fa -t GP2.extraction.KV884828.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: GP2  Protein # Glutathione peroxidase 2 (GPx2) # Zebrafish
        Target: KV884828.1:subseq(702560,100000) Monopterus albus unplaced genomic scaffold scaffold140.1, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 661
   Query range: 0 -> 189
  Target range: 50000 -> 48942

     1 : MetThrPheIleAlaLysThrPheTyrAspLeuHisAlaThrThrLeuGluGlyAspThr :    20
         ||||||||||||||||||||||||||||||||| ! |||||||||||||||||||||:!!
         MetThrPheIleAlaLysThrPheTyrAspLeuLysAlaThrThrLeuGluGlyAspSer
 50000 : ATGACCTTCATCGCCAAGACCTTCTACGACTTGAAAGCCACCACGCTGGAGGGAGACTCG : 49943

    21 : IleAspPheAsnIleTyrArgGlyArgValValLeuIleGluAsnValAlaSerLeuUnk :    40
         :!:|||||||||:!:!:!|||||||||||||||||||||||||||||||||||||||   
         ValAspPheAsnValPheArgGlyArgValValLeuIleGluAsnValAlaSerLeu***
 49942 : GTGGACTTTAACGTGTTTAGGGGACGGGTGGTCCTCATAGAGAATGTGGCCTCGCTCTGA : 49883

    41 : GlyThrThrThrGlnAspTyrThrGlnLeuAsnGluLeuGlnSerArgTyrProHisArg :    60
         ||||||||||||  !! !|||!:!:!!||||||:!!|||||||||!:!||||||||||||
         GlyThrThrThrGlyAlaTyrSerGluLeuAsnGlnLeuGlnSerLysTyrProHisArg
 49882 : GGCACCACCACCGGGGCCTACAGCGAACTCAACCAGCTTCAGAGCAAGTACCCCCATCGG : 49823

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyTyrGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||            506 bp
         LeuValValLeuGlyPheProCysAsnGlnPheGlyTyrGln++                
 49822 : CTGGTGGTCCTGGGTTTTCCCTGTAACCAGTTTGGATATCAGgt................ : 49776

    76 : on 1 >>>>  GluAsnCysSerAspGlyGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    ||||||||||||:!!||||||||||||!:!||||||:!!:!!|||||||
                  ++GluAsnCysSerAsnGlyGluIleLeuSerSerLeuGlnHisValArgP
 49775 : .........agGAGAACTGCTCCAACGGTGAGATCCTAAGTTCACTGCAGCATGTACGCC : 49224

    92 : roGlyGluGlyTyrLysProSerPheThrIlePheGlnLysCysValValAsnGlySerA :   111
         |||||!  |||!:!:!!|||!:!||||||:!!|||:!!||||||! !|||||||||::::
         roGlyGlyGlyPheGlnProAsnPheThrValPheGluLysCysAspValAsnGlyThrA
 49223 : CAGGTGGTGGCTTTCAGCCCAACTTCACTGTCTTTGAGAAGTGTGACGTCAAtggaacaa : 49164

   112 : spAlaHisProValPheSerTyrLeuLysAspLysLeuProTyrProAspAspAspProV :   131
         ::...||||||||||||:!!|||||||||:!!||||||||||||||||||||||||||| 
         snThrHisProValPheAlaTyrLeuLysAsnLysLeuProTyrProAspAspAspProS
 49163 : acacacatccagtCTTTGCCTATCTGAAAAACAAGCTCCCTTATCCCGATGATGACCCTA : 49104

   132 : alThrLeuIleGlnAspProLysTyrLeuValTrpAsnProValSerArgAsnAspIleS :   151
          !:!:                                       ...            .
         erSerUnkUnkUnkUnkUnkUnkUnk---------------UnkUnkUnkUnkUnkUnkU
 49103 : GCTCNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNN : 49059

   152 : erTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheLysArgTyrSerL :   171
         ..        !|||||||||||||||||||||||||||||||||||||||||||||||||
         nkUnkUnkUnkGluLysPheLeuIleGlyProGluGlyGluProPheLysArgTyrSerL
 49058 : NNNNNNNNNCTGAGAAATTTCTCATTGGGCCTGAGGGAGAGCCCTTTAAAAGATACAGCA : 48999

   172 : ysLysPheGlnThrIleAsnIleGluProAspIleGlnArgLeuLeuLysLeuThr :   189
         ||!:!|||!  ||||||.!.!!:||||||||||||||||||||||||!:!||||||
         ysArgPheProThrIleGluMetGluProAspIleGlnArgLeuLeuArgLeuThr
 48998 : AAAGGTTCCCCACCATTGAAATGGAGCCTGACATCCAAAGACTGTTAAGATTAACC : 48943

vulgar: GP2 0 189 . KV884828.1:subseq(702560,100000) 50000 48942 - 661 M 74 222 5 0 2 I 0 502 3 0 2 M 65 195 G 5 0 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	gene	48943	50000	661	-	.	gene_id 1 ; sequence GP2 ; gene_orientation +
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	cds	49779	50000	.	-	.	
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	exon	49779	50000	.	-	.	insertions 0 ; deletions 0
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	splice5	49777	49778	.	-	.	intron_id 1 ; splice_site "GT"
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	intron	49273	49778	.	-	.	intron_id 1
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	splice3	49273	49274	.	-	.	intron_id 0 ; splice_site "AG"
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	cds	48943	49272	.	-	.	
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	exon	48943	49272	.	-	.	insertions 0 ; deletions 5
KV884828.1:subseq(702560,100000)	exonerate:protein2genome:local	similarity	48943	50000	661	-	.	alignment_id 1 ; Query GP2 ; Align 50001 1 222 ; Align 49273 75 195 ; Align 49078 145 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis