________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-33
 Query name: gi|525343961|ref|NP_001266640.1| glutathione peroxidase [Oreochromis niloticus] >gi|259124047|gb|ACV93251.1| glutathione peroxidase [Oreochromis niloticus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/275692218/tempfiles/temptarget.fasta
 Chromosome: KV884724.1:subseq_773706,100000_ Strand: +
 Positions:
 -Exon 1  48752        48976
 -Exon 2  50045        50392

 Redox box: no

Query   MAGHLKRFYDLTAKLLSGETLRFSALKDKVVLIENVASLUGTTTRDYTQVNDLHSRYSAEGLVILGVPCNQFGHQ <---Intron---> ENCKNDEIL
        |||//||||/ ||||||||   ||||| | ||||||/||||||||||||/|||||||| /||||||||||||||| <   1068bp   > ||  |||||
Target  MAGNVKRFYEFTAKLLSGEMFSFSALKGKAVLIENVSSLUGTTTRDYTQMNDLHSRYSTKGLVILGVPCNQFGHQ                ENSMNDEIL
        aggagaattgtagatctggatattgcagaggcagagttctgaaaagtacaagcctcttaagcgacggctactgcc                gataaggac
        tcgatagtaatccattcgattgtcctagactttaatcctggcccgaacataatacgaccagttttgtcgaatgaa                aactaaatt
        gtttgagtcgcataggtaagctccaggcatcctgtggttaaaaagtctggcctctttccaccttgttcctgtatg                gccgttaca
                                               *                                                            

Query   RSLKYVRPGNGFEPKFQLLEKVDVNGKDAHPLFVYLKEKLPFPCDDALGLMNDPKYIIWSPVCRNDVSWNFEKFLVGPDGEPYKRYSRNFLTSDIEADIK
        ||||||||||||||||||||||/|||||||||||/|||||||| |||  ||||||/||||||||||/||||||||| ||||||||||||||| ||||||/
Target  RSLKYVRPGNGFEPKFQLLEKVNVNGKDAHPLFVFLKEKLPFPSDDATALMNDPKFIIWSPVCRNDISWNFEKFLVTPDGEPYKRYSRNFLTIDIEADIQ
        atcatgccgagtgcatcccgagagagaggccttgtcagacctcagggagcaagcataatacgtaagattatgatcgacgggctactaaatcaagagggac
        gctaatgcgagtacatattaatatagaacactttttaaatctcgaacccttaacatttggctggaatcgataatttccagacaagaggattctatacata
        atggtccagtctaaacgcagggtgtaatctcgtgtggagtatctttctccgttagcctgcagtattccgctggcgctttgggcgcccatccctctagtta
                                                                                                            

Query   QLLKRIK
        /|||/||
Target  ELLKKIK
        gccaaaa
        attaata
        gacagcg
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 185 ; UGA-SECIS: 638

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884724.1:subseq_773706,100000_ Strand = + Positions = 50578 - 50645
 Found by:  Infernal (score=27.94) Covels (score=28.18)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -12.8

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((---....{[[((({(((((((.........-----...)))))))})))]]}..--....))))})...
 target  UCAGAUUAC---CCAAUGAAGAGACUCCUUGAAAACUUU-----UGAGGGGAGUGUCUGAUGA--AGAUGUAAAUACU
                         ****           ^^^                       ****