Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP1b.x.fa -t GP1b.extraction.KV884724.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: GP1b  Protein # Glutathione peroxidase 1b (GPx1b) # Zebrafish
        Target: KV884724.1:subseq(773706,100000) Monopterus albus unplaced genomic scaffold scaffold36.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 807
   Query range: 0 -> 191
  Target range: 48751 -> 50392

     1 : MetAlaGlyThrMetLysLysPheTyrAspLeuSerAlaLysLeuLeuSerGlyAspLeu :    20
         |||||||||!.!:!!|||!:!||||||!!:!!!!!!||||||||||||||||||!!::!!
         MetAlaGlyAsnValLysArgPheTyrGluPheThrAlaLysLeuLeuSerGlyGluMet
 48752 : ATGGCTGGTAATGTGAAAAGGTTTTACGAGTTCACAGCTAAATTGCTGTCTGGAGAAATG : 48809

    21 : LeuAsnPheSerSerLeuLysGlyLysValValLeuIleGluAsnValAlaSerLeuUnk :    40
         !!!!:!||||||:!!||||||||||||!.!||||||||||||||||||:!!||||||   
         PheSerPheSerAlaLeuLysGlyLysAlaValLeuIleGluAsnValSerSerLeu***
 48810 : TTCAGTTTCTCCGCACTGAAGGGCAAAGCTGTCCTCATTGAGAATGTGTCGTCTCTTTGA : 48869

    41 : GlyThrThrValArgAspTyrThrGlnMetAsnGluLeuHisSerArgTyrAlaAspGln :    60
         |||||||||..!|||||||||||||||||||||!!:|||||||||||||||:!!  !:!!
         GlyThrThrThrArgAspTyrThrGlnMetAsnAspLeuHisSerArgTyrSerThrLys
 48870 : GGAACAACAACAAGGGATTACACTCAGATGAACGACCTTCACTCTCGTTATTCCACCAAA : 48929

    61 : GlyLeuValValLeuGlyAlaProCysAsnGlnPheGlyHisGln  >>>> Target I :    76
         |||||||||:!!||||||!.!||||||||||||||||||||||||           1068
         GlyLeuValIleLeuGlyValProCysAsnGlnPheGlyHisGln++             
 48930 : GGCCTCGTTATTCTGGGTGTTCCCTGCAATCAGTTTGGACATCAGgt............. : 48979

    77 : ntron 1 >>>>  GluAsnCysLysAsnGluGluIleLeuGlnSerLeuLysTyrValA :    91
          bp           ||||||! !! !|||!!:|||||||||::!||||||||||||||||
                     ++GluAsnSerMetAsnAspGluIleLeuArgSerLeuLysTyrValA
 48980 : ............agGAGAACTCCATGAATGATGAAATCCTAAGATCTCTGAAGTATGTCC : 50090

    92 : rgProGlyAsnGlyPheGluProLysPheGlnIleLeuGluLysLeuGluValAsnGlyG :   111
         ||||||||||||||||||||||||||||||||:!!|||||||||:!!.!.|||||||||:
         rgProGlyAsnGlyPheGluProLysPheGlnLeuLeuGluLysValAsnValAsnGlyL
 50091 : GCCCAGGGAATGGCTTTGAACCAAAATTCCAGCTCCTAGAGAAGGTGAATGTGAATGGAA : 50150

   112 : luAsnAlaHisProLeuPheAlaPheLeuLysGluLysLeuProGlnProSerAspAspP :   131
         !!:!!|||||||||||||||...|||||||||||||||||||||   |||||||||||| 
         ysAspAlaHisProLeuPheValPheLeuLysGluLysLeuProPheProSerAspAspA
 50151 : AAGATGCCCATcccttgtttgtgtttctgaaggAAAAGCTTCCATTTCCCAGTGATGATG : 50210

   132 : roValSerLeuMetGlyAspProLysPheIleIleTrpSerProValCysArgAsnAspI :   151
         !!..!:!!||||||...|||||||||||||||||||||||||||||||||||||||||||
         laThrAlaLeuMetAsnAspProLysPheIleIleTrpSerProValCysArgAsnAspI
 50211 : CCACTGCCCTCATgaatgatccaaagttcatcaTTTGGAGCCCAGTGTGTAGAAATGATA : 50270

   152 : leSerTrpAsnPheGluLysPheLeuIleGlyProAspGlyGluProPheLysArgTyrS :   171
         ||||||||||||||||||||||||||:!!  !|||||||||||||||!:!||||||||||
         leSerTrpAsnPheGluLysPheLeuValThrProAspGlyGluProTyrLysArgTyrS
 50271 : TCTCCTGGAACTTTGAGAAGTTCCTGGTCACTCCTGATGGGGAGCCGTACAAGCGCTACA : 50330

   172 : erArgArgPheLeuThrIleAspIleAspAlaAspIleLysGluLeuLeuLysArgThrL :   191
         |||||!.!||||||||||||||||||!!:|||||||||:!!||||||||||||!:!! !|
         erArgAsnPheLeuThrIleAspIleGluAlaAspIleGlnGluLeuLeuLysLysIleL
 50331 : GCAGAAATTTCCTCACCATTGACATTGAAGCGGATATTCAAGAGCTACTCAAAAAGATCA : 50390

   192 : ys :   191
         ||
         ys
 50391 : AG : 50392

vulgar: GP1b 0 191 . KV884724.1:subseq(773706,100000) 48751 50392 + 807 M 75 225 5 0 2 I 0 1064 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	gene	48752	50392	807	+	.	gene_id 1 ; sequence GP1b ; gene_orientation +
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	cds	48752	48976	.	+	.	
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	exon	48752	48976	.	+	.	insertions 0 ; deletions 0
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	splice5	48977	48978	.	+	.	intron_id 1 ; splice_site "GT"
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	intron	48977	50044	.	+	.	intron_id 1
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	splice3	50043	50044	.	+	.	intron_id 0 ; splice_site "AG"
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	cds	50045	50392	.	+	.	
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	exon	50045	50392	.	+	.	insertions 0 ; deletions 0
KV884724.1:subseq(773706,100000)	exonerate:protein2genome:local	similarity	48752	50392	807	+	.	alignment_id 1 ; Query GP1b ; Align 48752 1 225 ; Align 50045 76 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis