________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-68
 Query name: gi|428160949|gb|AFY97791.1| glutathione peroxidase 1b [Sparus aurata]
 Query range: 3-187  (total 187)

 Target: /data/www-rg/seblastian_results/162646030/tempfiles/temptarget.fasta
 Chromosome: KV884777.1:subseq_695402,100000_ Strand: -
 Positions:
 -Exon 1  50934        51140
 -Exon 2  49653        50000

 Redox box: no

Query   KFYDLTAKLLTGETFKFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYAGKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEILMSLKYI
        ||// |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| <   933bp    > |||||/|||/||||/
Target  KFHEFTAKLLTGETFNFSSLQGKVVLIENVASLUGTTVRDYTQMNELHERYASKGLVILGVPCNQFGHQ                ENCKNEEILLSLKYV
        atcgtagactaggatatttccgaggcagaggtctgaagagtacaagccgctgaagcgacggctactgcc                gataaggacctcatg
        ataatccattcgactatcctagattttaatcctggcctgaacataataagacgagttttgtcgaatgaa                aagaaaatttctaat
        atcgcccacagaagtttccggcatcctgtggttatgccgtccggcgccggcccggcacgagcccgcctg                gccgtaattgtcgcc
                                         *                                                                  

Query   RPGNGFEPKFQLLEKVDVNGKDAHPMFVFLREKLPFPSDEPSALMTDPKLIIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRRFLTSDIEGDIKKLLEKA
        |||||||||||||||||||||||||/||||/|||| ||||| ||||||| |||||||||||/|||||||||||| |||||||||||||/|||||||| /|
Target  RPGNGFEPKFQLLEKVDVNGKDAHPLFVFLKEKLPSPSDEPFALMTDPKFIIWSPVCRNDVSWNFEKFLIGPDGEPFKRYSRRFLTSDLEGDIKKLLSQA
        ccgagtgcatcccgagggagaggccttgtcagacctcaggctgcaagcataatacgtaaggttatgatcagcgggctactaaatcaagcgggaaaccacg
        gcgagtacatattaatatagaacactttttaaatcccgaactcttcacatttggctggaatcgataatttgcagactagagggttcgatagataattgac
        ttatctgcgtgcgggatgtggtctcgtgcgaggcgcctcgaccggtcggtccgcgccgtcgcgctggcctgttaggcgtccggccccctgaccggcccga
                                                                                                            

Query   N
        |
Target  N
        a
        a
        c
         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 188 ; UGA-SECIS: 641

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884777.1:subseq_695402,100000_ Strand = - Positions = 49464 - 49400
 Found by:  Infernal (score=35.18) Covels (score=25.64)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -16.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((---....{[[((({(((((((......--.-----...)))))))})))]]}..--..-.)))))))))
 target  UUUUUUUAC---UACAUGAAGACAUCCUCUGAAACC--G-----UAAGGGGGGUAUCUGAUGA--AU-UGUAAAAGGG
                         ****           ^^^                       ****